|
| Status |
Public on Mar 18, 2014 |
| Title |
miRNAs trigger widespread epigenetically-activated siRNAs from transposons in Arabidopsis [PARE-seq] |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Non-coding RNA profiling by high throughput sequencing
|
| Summary |
Utilizing whole-genome Parallele Analysis of RNA Ends (PARE)-seq to analyze the degradome to assess miRNA-binding of transposons in DNA methylation mutants, and RNAi mutants, compared to wildtype.
|
| |
|
| Overall design |
Genome-wide small RNA profiling was done by Illumina TruSeq sample preparation followed by high-throughput sequencing with Illumina HiSeq 2000 platform.
|
| |
|
| Contributor(s) |
Creasey KM, Martienssen RA |
| Citation(s) |
24670663 |
| |
| Submission date |
Nov 13, 2013 |
| Last update date |
May 15, 2019 |
| Contact name |
Kate M Creasey |
| Organization name |
Cold Spring Harbor Laboratory
|
| Department |
Plant Sciences
|
| Street address |
1 Bungtown Road
|
| City |
Cold Spring Harbor |
| State/province |
NY |
| ZIP/Postal code |
11724 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL13222 |
Illumina HiSeq 2000 (Arabidopsis thaliana) |
|
| Samples (4)
|
|
| This SubSeries is part of SuperSeries: |
| GSE52952 |
miRNAs trigger widespread epigenetically-activated siRNAs from transposons in Arabidopsis |
|
| Relations |
| BioProject |
PRJNA229994 |
| SRA |
SRP033352 |
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