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| Status |
Public on Feb 05, 2014 |
| Title |
Corrinoid salvaging and remodeling by Dehalococcoides mccartyi strain 195 in a defined consortium containing a corrinoid-producer Pelosinus fermentans strain R7 |
| Platform organisms |
Dehalococcoides mccartyi BAV1; Dehalococcoides mccartyi 195; Dehalococcoides mccartyi CBDB1; Dehalococcoides mccartyi VS |
| Sample organisms |
Nitratidesulfovibrio vulgaris str. Hildenborough; Dehalococcoides mccartyi 195; Pelosinus fermentans DSM 17108 |
| Experiment type |
Expression profiling by array
|
| Summary |
Differental gene expression of three consortia: Dhc195/DVH with exogenous cobalamin, Dhc195/DVH/PF with exogenous cobalamin, Dhc195/DVH/PF without exogenous cobalamin
Acronyms: Dhc195: Dehalococcoides mccartyi strain 195; DVH: Desulfovibrio vulgaris Hildenborough; PF: Pelosinus fermentans strain R7
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| Overall design |
The total RNA of cells in the three consortia extracted at exponential growth phase of Dhc195 was dechlorinated to VC was applied on the microarray to query the transcript levels of Dhc195 genes
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| Contributor(s) |
Men Y, Seth EC, Yi S, Allen RH, Taga ME, Alvarez-Cohen L |
| Citation(s) |
24463969 |
| |
| Submission date |
Mar 27, 2013 |
| Last update date |
May 19, 2014 |
| Contact name |
Yujie Men |
| Organization name |
University of Illinois at Urbana-Champaign
|
| Street address |
205 N Mathews Ave
|
| City |
Urbana |
| ZIP/Postal code |
61801 |
| Country |
USA |
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| Platforms (1) |
| GPL10838 |
[4dehalosa520666F] Affymetrix Dehalococcoides genus 4.8K array |
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| Samples (9)
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| Relations |
| BioProject |
PRJNA194543 |
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