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| Status |
Public on Mar 15, 2013 |
| Title |
Methylome of Salmonella enterica subsp. Enterica serovar Javiana str. CFSAN001992 by PacBio SMRT Sequencing |
| Organism |
Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992 |
| Experiment type |
Methylation profiling by high throughput sequencing
|
| Summary |
Single-molecule read technologies allow for detection of epigenomic base modifications during routine sequencing by analysis of kinetic data during the reaction, including the duration between base incorporations at the elongation site (the "inter-pulse duration.") Methylome data associated with a closed de novo bacterial genome of Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992 was produced and submitted to the Gene Expression Omnibus.
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| |
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| Overall design |
Single-sample sequencing and base modification detection of cultured isolate of a foodborne pathogen.
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| Contributor(s) |
Payne J, Muruvanda T, Allard M |
| Citation(s) |
23516208 |
| BioProject |
PRJNA183458 |
| |
| Submission date |
Mar 14, 2013 |
| Last update date |
May 15, 2019 |
| Contact name |
Justin St. Giles Payne |
| E-mail(s) |
[email protected]
|
| Phone |
2404025127
|
| Organization name |
FDA/CFSAN
|
| Department |
DM
|
| Lab |
MMSB
|
| Street address |
5100 Paint Branch Parkway
|
| City |
College Park |
| State/province |
Maryland |
| ZIP/Postal code |
20740 |
| Country |
USA |
| |
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| Platforms (1) |
| GPL16793 |
PacBio RS (Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992) |
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| Samples (1) |
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| Relations |
| SRA |
SRP017708 |
