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| Status |
Public on Nov 02, 2012 |
| Title |
Genome-Wide HDA18-Binding Sites in Arabidopsis Root Tips |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Genome binding/occupancy profiling by genome tiling array
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| Summary |
We found that histone acetylation relays positional information and that a mutant altered in the histone deacetylase (HDAC) gene family member HDA18 exhibits altered H and N epidermal cell patterning. We then performed genome-wide location (ChIP-chip) analyses by using antibody against HDA18 in transgenic HDA18 overexpression Arabidopsis plants. These analyses identified statistically significant enriched DNA associated with HDA18. A total of 286 DNA fragments were enriched as putative HDA18 protein-binding sites.
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| Overall design |
Root tips of P35S:HDA18 Arabidopsis plants (Col-0) ChIPed with HDA18 antibody vs. pre-immune mouse serum.
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| Contributor(s) |
Liu C, Bai S, Li L |
| Citation(s) |
23362208 |
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| Submission date |
Nov 01, 2012 |
| Last update date |
May 09, 2017 |
| Contact name |
Linchen Li |
| E-mail(s) |
[email protected]
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| Organization name |
Peking University
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| Department |
College of Life Sciences
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| Lab |
Bai Shunong
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| Street address |
5 Yiheyuan Road
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| City |
Beijing |
| ZIP/Postal code |
100871 |
| Country |
China |
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| Platforms (1) |
| GPL10977 |
[At35b_MR] Affymetrix Arabidopsis Tiling 1.0R Array |
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| Samples (1) |
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| Relations |
| BioProject |
PRJNA178667 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE41991_RAW.tar |
52.2 Mb |
(http)(custom) |
TAR (of BED, CEL, TXT) |
| Processed data provided as supplementary file |
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