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| Status |
Public on Nov 14, 2005 |
| Title |
Transcriptome analysis of ROP10 GTPase-mediated abscisic acid (ABA) signaling in Arabidopsis |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by array
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| Summary |
In this study, we have identified genes that are respectively activated and repressed by the low concentration of ABA and show that ROP10 gates a specific subset of genes that are responsive only to a low ABA concentration.
Keywords: Whole seedlings of wild-type (Ws) and the mutant (rop10-1) treated with or without ABA
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| Overall design |
12 Arabidopsis ATH1 chips were purchased from Affymetrix. Total RNA was extracted and purified from 1µM ABA-treated or non-treated Ws and rop10-1. Each genotype/treatment has three biological replicates. Probe labeling, array hybridization and scanning were done by the University of California-Irvine DNA Microarray Facility.
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| Contributor(s) |
Zheng Z, Xin Z, Zhao Y |
| Citation(s) |
16258012 |
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| Submission date |
Oct 14, 2005 |
| Last update date |
Jun 12, 2017 |
| Contact name |
Zhi-Liang Zheng |
| Organization name |
Lehman College of City University of New York
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| Department |
Biological Sciences
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| Street address |
250 Bedford Park Blvd W
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| City |
Bronx |
| State/province |
NY |
| ZIP/Postal code |
10468 |
| Country |
USA |
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| Platforms (1) |
| GPL198 |
[ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array |
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| Samples (12)
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| GSM78332 |
Ws wild-type, no ABA control, replicate 1 |
| GSM78333 |
Ws wild-type, no ABA control, replicate 2 |
| GSM78334 |
Ws wild-type, no ABA control, replicate 3 |
| GSM78335 |
rop10-1 mutant, no ABA control, replicate 1 |
| GSM78336 |
rop10-1 mutant, no ABA control, replicate 2 |
| GSM78337 |
rop10-1 mutant, no ABA control, replicate 3 |
| GSM78338 |
Ws wild-type, 1µM ABA treatment, replicate 1 |
| GSM78339 |
Ws wild-type, 1µM ABA treatment, replicate 2 |
| GSM78340 |
Ws wild-type, 1µM ABA treatment, replicate 3 |
| GSM78341 |
rop10-1 mutant, 1µM ABA treatment, replicate 1 |
| GSM78342 |
rop10-1 mutant, 1µM ABA treatment, replicate 2 |
| GSM78343 |
rop10-1 mutant, 1µM ABA treatment, replicate 3 |
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| Relations |
| BioProject |
PRJNA93389 |
| Supplementary data files not provided |
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