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| Status |
Public on Jan 26, 2012 |
| Title |
Expression data from peripheral blood - blood draws at Pre and Post time points of Allergen inhalation challenge (PAX.NGR) |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by array
|
| Summary |
Detecting differential changes in the peripheral whole-blood transcriptome, post-challenge compared to pre-challenge; using non-globin reduced PAXgene (PAX.NGR) tubes
Blood was collected immediately prior to, and two hours after challenge
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| |
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| Overall design |
Preprocessing and filtering were applied to the PAX.NGR dataset using the Factor Analysis for Robust MicroArray Summarization (farms) package in R
The Linear Models for MicroArrays (limma) package in R was used to determine differential gene expression using a Benjamini Hochberg FDR of 5%.
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| |
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| Contributor(s) |
Kam SH, Singh A, He J, Ruan J, Gauvreau GM, O'Byrne PM, FitzGerald JM, Tebbutt SJ |
| Citation(s) |
22316092 |
| |
| Submission date |
Dec 05, 2011 |
| Last update date |
Jul 26, 2018 |
| Contact name |
Scott Tebbutt |
| E-mail(s) |
[email protected]
|
| Organization name |
University of British Columbia
|
| Department |
Medicine
|
| Lab |
James Hogg Research Centre
|
| Street address |
Room 166, 1081 Burrard Street
|
| City |
Vancouver |
| State/province |
BC |
| ZIP/Postal code |
V6Z 1Y6 |
| Country |
Canada |
| |
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| Platforms (1) |
| GPL6244 |
[HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [transcript (gene) version] |
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| Samples (8)
|
| GSM843264 |
Subject 004 PAX.NGR, biological rep1 |
| GSM843265 |
Subject 004 PAX.NGR, biological rep2 |
| GSM843266 |
Subject 005 PAX.NGR, biological rep1 |
| GSM843267 |
Subject 005 PAX.NGR, biological rep2 |
| GSM843268 |
Subject 006 PAX.NGR, biological rep1 |
| GSM843269 |
Subject 006 PAX.NGR, biological rep2 |
| GSM843270 |
Subject 026 PAX.NGR, biological rep1 |
| GSM843271 |
Subject 026 PAX.NGR, biological rep2 |
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| This SubSeries is part of SuperSeries: |
| GSE34172 |
Expression data from peripheral blood - blood draws at Pre and Post time points of Allergen inhalation challenge |
|
| Relations |
| BioProject |
PRJNA156469 |
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