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Series GSE29485 Query DataSets for GSE29485
Status Public on Jul 01, 2011
Title Expression data from Mouse embryo
Organism Mus musculus
Experiment type Expression profiling by array
Summary Mice lacking the function of the PcG protein CBX2 (also known as M33) show defects in gonadal, adrenal, and splenic development. In particular, XY knockout mice develop ovaries but not testes, and the gonads are hypoplastic in both sexes.
To clarify the molecular basis of the defects, RNA prepared from both wild type and KO gonads were subjected to microarray analyses.
 
Overall design Mouse embryonic gonads of Cbx2 knockout (KO) were sectioned and recovered at E11.5 for RNA extraction and hybridization on Affymetrix microarrays. Four different genotypes of embryos at E11.5 (XY WT, XX WT, XY Cbx2 KO, and XX Cbx2 KO) were frozen in OCT compound without fixation. They were sectioned to 30 μm slices and stained with hematoxylin. The developing gonadal cells localized by GATA4 immunostaining and morphology were prepared using a Laser Microdissection System. The specimens prepared from two or three individuals were combined into one group, and three groups were prepared for each genotype.
 
Contributor(s) Katoh-Fukui Y, Morohashi K
Citation(s) 22186409
Submission date May 23, 2011
Last update date Feb 11, 2019
Contact name Yuko Katoh-Fukui
E-mail(s) [email protected]
Organization name National Inastitute for Longevity Sciences
Street address 35genngo ,moriokamachi
City Oobu
ZIP/Postal code 4748511
Country Japan
 
Platforms (1)
GPL1261 [Mouse430_2] Affymetrix Mouse Genome 430 2.0 Array
Samples (12)
GSM729412 Cbx2_KO_XX_1
GSM729413 Cbx2_KO_XX_2
GSM729414 Cbx2_KO_XX_3
Relations
BioProject PRJNA141643

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE29485_RAW.tar 43.4 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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