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| Status |
Public on Dec 19, 2024 |
| Title |
To identify HDAC3 occupancy in the genomes of ME49 and ΔXII-5 strains |
| Organism |
Toxoplasma gondii |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
Toxoplasma gondii is a ubiquitous protozoan parasite with a complex life cycle containing multiple developmental stages. The parasites have distinct gene expression patterns at different stages to enable stage specific life activities, but the underlying regulatory mechanisms are largely unknown. In this study, we identified a nuclear complex that controls the expression of developmentally regulated genes, especially merozoite specific genes. This complex consists of the AP2 family transcription factor AP2Ⅻ-5, the epigenetic factors MORC and HDAC3, as well as a novel AP2Ⅻ-5 interacting protein 1 (AIP1) that stabilizes this complex. At the tachyzoite stage when the parasites proliferate rapidly by asexual endodyogeny, AP2Ⅻ-5 binds to the promoter regions of developmentally activated genes and recruits MORC and HDAC3 to suppress their expression. When sexual commitment and merozoite development is triggered, the abundance of AP2Ⅻ-5 decreases and its suppression on target genes is relieved. In contrast to MORC and HDAC3, which regulate Toxoplasma development but are also essential for tachyzoite growth, AP2Ⅻ-5 and AIP1 are dispensable for tachyzoite proliferation in vitro. These data suggest that while MORC and HDAC3 have broad regulatory activities, forming a complex with AP2Ⅻ-5 and AIP1 enables them to specifically regulate gene expression during development.
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| Overall design |
To determine the HDAC3 binding sites in the genomes of ME49 and ΔⅫ-5 strains using CUT&Tag.
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| Contributor(s) |
Xue L, Shen B |
| Citation missing |
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| Submission date |
Dec 03, 2024 |
| Last update date |
Dec 19, 2024 |
| Contact name |
xue lilan |
| E-mail(s) |
[email protected]
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| Phone |
13763312131
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| Organization name |
huazhong agriculture university
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| Street address |
shizishan
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| City |
wuhan |
| State/province |
请选择... |
| ZIP/Postal code |
410522 |
| Country |
China |
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| Platforms (1) |
| GPL26742 |
Illumina NovaSeq 6000 (Toxoplasma gondii) |
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| Samples (8)
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| GSM8662504 |
ME49,IgG,biol rep 2 |
| GSM8662505 |
KOXII5,HDAC3,biol rep 1 |
| GSM8662506 |
KOXII5,HDAC3,biol rep 2 |
| GSM8662507 |
KOXII5,IgG,biol rep 1 |
| GSM8662508 |
KOXII5,IgG,biol rep 2 |
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| Relations |
| BioProject |
PRJNA1193660 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE283441_ME49_IP_1.bigwig |
28.2 Mb |
(ftp)(http) |
BIGWIG |
| GSE283441_ME49_IP_2.bigwig |
39.1 Mb |
(ftp)(http) |
BIGWIG |
| GSE283441_XII5_IP_1.bigwig |
17.6 Mb |
(ftp)(http) |
BIGWIG |
| GSE283441_XII5_IP_2.bigwig |
38.9 Mb |
(ftp)(http) |
BIGWIG |
SRA Run Selector |
| Raw data are available in SRA |
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