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Series GSE280703 Query DataSets for GSE280703
Status Public on Nov 26, 2024
Title Inflammatory crosstalk impairs phagocytic receptors and aggravates atherosclerosis in clonal hematopoiesis in mice
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Low frequency Jak2VF mutations promote atherosclerosis via IL-1 mediated cross-talk. Therapeutic approaches that increase MERTK or TREM2 could promote plaque stabilization in inflammasome-driven atherosclerosis.
 
Overall design To determine if activating TREM2 could improve atherosclerosis in LAB Jak2VF CH mice, we administered 4D9 or isotype control IgG antibodies by i.p. injection beginning 2 weeks after initiation of the WD and continued injections with the diet for an additional 14 weeks. Digested live aortic cells were used for the Singe cell RNA-Seq analysis.
 
Contributor(s) Liu W, Kim E
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Oct 30, 2024
Last update date Nov 27, 2024
Contact name Chenyi Xue
Organization name Columbia University
Street address 630 W 168th St.
City New York
State/province NY
ZIP/Postal code 10032
Country USA
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (2)
GSM8604427 Low allele burden Jak2VF, IgG
GSM8604428 Low allele burden Jak2VF, 4D9
Relations
BioProject PRJNA1179992

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE280703_RAW.tar 41.0 Mb (http)(custom) TAR (of MTX, TSV)
SRA Run SelectorHelp
Raw data are available in SRA

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