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| Status |
Public on Oct 13, 2018 |
| Title |
Dehalococcoides ethenogenes strain 195 in mixed culture continuous (PSS) PCE and TCE fed versus batch PCE fed |
| Platform organism |
Dehalococcoides mccartyi 195 |
| Sample organism |
Dehalococcoides mccartyi |
| Experiment type |
Expression profiling by array
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| Summary |
Bacteria of the group “Dehalococcoides” display the ability to respire recalcitrant chlorinated organic compounds in laboratory and field site applications. Though reductive dehalogenases (RDases) have been shown to directly catalyze dechlorination reactions, the respiratory pathways and function of most genome-encoded RDases in Dehalococcoides strains remain incompletely described. In order to broaden the understanding of the biological organization of “Dehalococcoides”, this study monitored the trancriptomic response of “Dehalococcoides ethenogenes” stain 195 through microarray technology.
Batch versus continuously fed cultures were examined and compared. When similarly respiring (~120 μeeq PCE/(L-hr)) batch and pseudo steady-state cultures were contrasted, the reductive dehalogenases (RDases) DET1545 and DET0180 were up-regulated in the PSS system indicating their activity at lower overall electron acceptor concentration.
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| Overall design |
6 arrays total, 2 biological replicates of continous PCE fed, 2 biological replicates of continous TCE fed, and 1 technical replicate of the PCE/TCE comparsion. Control is a sample of the Donna II mixed culture after 6 hours of batch PCE feeding. 1 Control versus Control array.
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| Contributor(s) |
Mansfeldt C, Rowe A, Heavner G, Richardson R |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
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| Submission date |
Nov 19, 2010 |
| Last update date |
Oct 13, 2018 |
| Contact name |
Cresten Mansfeldt |
| E-mail(s) |
[email protected]
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| Organization name |
Cornell University
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| Street address |
220 Hollister Hall
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| City |
Ithaca |
| State/province |
NY |
| ZIP/Postal code |
14850 |
| Country |
USA |
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| Platforms (1) |
| GPL11218 |
"Dehalococcoides ethenogenes" strain 195 with Methanogens and Fosmids, Base Composition Method |
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| Samples (6)
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| Relations |
| BioProject |
PRJNA142607 |
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