 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Mar 29, 2024 |
| Title |
Trichoderma atroviride small RNA1 targets the Arabidopsis PRIM2 gene to establish a mutualistic relationship |
| Organisms |
Arabidopsis thaliana; Trichoderma atroviride |
| Experiment type |
Non-coding RNA profiling by high throughput sequencing
|
| Summary |
This study investigates the multifaceted defense mechanisms of plants in response to beneficial fungi Trichoderma atroviride. The researchers focus on a small RNA, Ta_sRNA1, produced by T. atroviride during its interaction with Arabidopsis thaliana.
|
| |
|
| Overall design |
A. thaliana roots inoculation with T. atroviride was performed and then collected from the interaction zone at 24, 48, 72, and 96 h of coculture. Total RNA was extracted and sRNA-seq libraries were generated according to the sRNA cloning protocol provided by Solexa.
|
| |
|
| Contributor(s) |
Hernández-Hernández EJ, Castro M, Padrón-Rodríguez F, García-Ortega LF, González-López MC, Estrada-Rivera M, Jijón-Moreno S, Casas-Flores S |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Jan 26, 2024 |
| Last update date |
Mar 29, 2024 |
| Contact name |
Luis F. Garcia-Ortega |
| E-mail(s) |
[email protected]
|
| Organization name |
Center for Research and Advanced Studies of the National Polytechnic Institute (Cinvestav)
|
| Department |
Department of Genetic Engineering
|
| Lab |
Laboratory for research and learning in biological computing
|
| Street address |
Km 9.6 Libramiento Norte
|
| City |
Irapuato |
| State/province |
Guanajuato |
| ZIP/Postal code |
36824 |
| Country |
Mexico |
| |
|
| Platforms (2) |
| GPL17970 |
Illumina MiSeq (Arabidopsis thaliana) |
| GPL34134 |
Illumina MiSeq (Arabidopsis thaliana; Trichoderma atroviride) |
|
| Samples (10)
|
| GSM8037139 |
A. thalina/T. atroviride, 24 h, rep2 |
| GSM8037140 |
A. thalina/T. atroviride, 48 h, rep1 |
| GSM8037141 |
A. thalina/T. atroviride, 48 h, rep2 |
| GSM8037142 |
A. thalina/T. atroviride, 72 h, rep1 |
| GSM8037143 |
A. thalina/T. atroviride, 72 h, rep2 |
| GSM8037144 |
A. thalina/T. atroviride, 96 h, rep1 |
| GSM8037145 |
A. thalina/T. atroviride, 96 h, rep2 |
|
| Relations |
| BioProject |
PRJNA1069363 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE254275_raw_counts.tsv.gz |
842.2 Kb |
(ftp)(http) |
TSV |
SRA Run Selector |
| Raw data are available in SRA |
|
|
|
|
 |
Less...
More...