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Series GSE25399 Query DataSets for GSE25399
Status Public on Dec 31, 2010
Title Expression of PTTG1 is associated with aggressive clear cell RCC
Organism Homo sapiens
Experiment type Genome variation profiling by SNP array
Summary The pituitary-tumor transforming gene (PTTG1) is a recently discovered oncogene implicated in the malignant progression of a number of neoplasms. It has been shown to drive both endocrine and non-endocrine malignancies, but has not yet been studied in the context of renal cell carcinoma. Here we show that PTTG1 is frequently amplified and overexpressed in clear cell renal cell carcinoma, the most common form of kidney cancer. Clear cell RCC (ccRCC) is cytogenetically characterized by deletion of chromosome 3p, harboring the von-Hippel Lindau tumor suppressor gene, and amplification of chromosome 5q. The significance of copy number gain of chromosome 5 has to date remained a mystery, but is presumably the location of oncogenes that play an important role in ccRCC development or progression. The PTTG1 oncogene maps to chromosome 5q and shows frequent copy number gain in clear cell RCC, and is significantly overexpressed in tumor tissue relative to adjacent normal kidney. Furthermore, we have established a functional role for PTTG1 in ccRCC tumorigenesis and progression. PTTG1 ablation significantly reduces both the tumorigenic ability of ccRCC cells in vitro and in vivo and the invasive ability of these cells in vitro. An analysis of PTTG1 regulatory targets supports its role in the progression of localized ccRCC to invasive and metastatic disease, an idea further substantiated by PTTG1’s clinical correlation with high grade and high stage tumors and its association with poor prognosis. PTTG1-dependent overexpression of the Rho-GEF ECT2, another proto-oncogene, is observed in a number of ccRCC cell lines, and ECT2 overexpression correlates with PTTG1 overexpression, high stage, high grade, and poor prognosis in human ccRCC tumors. As GEF’s have been promoted as viable drug targets for targeted cancer therapeutics, the relationship between the PTTG1 and ECT2 oncogenes may be able to be exploited for the treatment of this disease.
 
Overall design SNP data on 74 ccRCC and 16 normal renal tissue samples were used to profile the cytogenetic gains or losses. The most frequent gains or losses were identified and gene expression data were then used to pinpoint the genes for further study.
 
Contributor(s) Zhang Z, Dykema K
Citation(s) 22805307
Submission date Nov 15, 2010
Last update date Dec 22, 2017
Contact name Bin Tean Teh
Organization name Van Andel Institute
Department Cancer Genetics
Street address 330 Bostwick Av
City Grand Rapids
State/province MI
ZIP/Postal code 49503
Country USA
 
Platforms (2)
GPL2004 [Mapping50K_Hind240] Affymetrix Human Mapping 50K Hind240 SNP Array
GPL2005 [Mapping50K_Xba240] Affymetrix Human Mapping 50K Xba240 SNP Array
Samples (90)
GSM623648 CC_Kidney_005_SNP_Xba
GSM623649 CC_Kidney_009_SNP_Xba
GSM623650 CC_Kidney_012_SNP_Xba
Relations
BioProject PRJNA134135

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE25399_RAW.tar 1.1 Gb (http)(custom) TAR (of CEL)
GSE25399_processed_data_table.txt.gz 3.4 Mb (ftp)(http) TXT
Processed data are available on Series record

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