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Series GSE250585 Query DataSets for GSE250585
Status Public on Oct 23, 2024
Title Establishment and comparison of human term placenta-derived trophoblast cells
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary We established an immortalized term placenta-derived trophoblast cell line and demonstrated functional and transcriptomic differences against chorion trophoblasts and BeWo cells.
 
Overall design Cells were isolated from term placenta utilizing enzymatic digestion, modified Percoll gradient-density isolation, and immunomagnetic purification. The resulting HLA-ABC (-) placental trophoblast cells (PTC) were immortalized using SV40T transfection to generate immortalized human PTC cytotrophoblasts (hPTCCTB). Additionally, these cells were transformed into syncytiotrophoblasts (hPTCSTB) using forskolin. The hPTCCTB cells were compared with their pPTC origin, choriocarcinoma cells (BeWo), and a commercially available PTC cell line using total RNA sequencing followed by principal component analysis (PCA) to determine differences in transcriptome profiles. The hPTCCTB cells were further compared with their pPTC origin for cell-specific markers (immunocytochemistry) and function (NF-kB and p38MAPK activations) after treatment with LPS and cigarette smoke extract (oxidative stress inducer).
 
Contributor(s) Vidal MS
Citation(s) 38330185
Submission date Dec 19, 2023
Last update date Oct 23, 2024
Contact name Manuel Jr Sabalo Vidal
E-mail(s) [email protected]
Phone +639771270097
Organization name UTMB
Department Department of Obstetrics and Gynecology
Lab Menon Laboratory
Street address 301 University Drive
City Galveston
State/province Texas
ZIP/Postal code 77555
Country USA
 
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (31)
GSM7982243 B_CSE_1
GSM7982244 B_CSE_2
GSM7982245 B_CSE_3
Relations
BioProject PRJNA1054579

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SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE250585_4_genes_fpkm_expression.txt.gz 7.8 Mb (ftp)(http) TXT
GSE250585_4_genes_fpkm_expression_-_1.txt.gz 10.2 Mb (ftp)(http) TXT
GSE250585_4_genes_fpkm_expression_-_2.txt.gz 7.4 Mb (ftp)(http) TXT
GSE250585_4_genes_fpkm_expression_-_3.txt.gz 4.7 Mb (ftp)(http) TXT
GSE250585_4_genes_fpkm_expression_-_4.txt.gz 7.8 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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