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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Dec 02, 2024 |
| Title |
High-throughput capture of transcription factor-driven chromatin dynamics using PHILO ChIP-seq |
| Organisms |
Cannabis sativa; Arabidopsis thaliana; Solanum lycopersicum |
| Experiment type |
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
This SuperSeries is composed of the SubSeries listed below.
|
| |
|
| Overall design |
Refer to individual Series
|
| |
|
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Dec 08, 2023 |
| Last update date |
Dec 03, 2024 |
| Contact name |
Mark Zander |
| E-mail(s) |
[email protected]
|
| Organization name |
Rutgers State University of New Jersey
|
| Street address |
190 Frelinghuysen Rd
|
| City |
Piscataway |
| ZIP/Postal code |
08854 |
| Country |
USA |
| |
|
| Platforms (3) |
| GPL19580 |
Illumina NextSeq 500 (Arabidopsis thaliana) |
| GPL21762 |
Illumina NextSeq 500 (Solanum lycopersicum) |
| GPL34008 |
Illumina NextSeq 500 (Cannabis sativa) |
|
| Samples (229)
|
| GSM7962242 |
PHILO, Col-0, H3K9ac, rep2 |
| GSM7962243 |
PHILO, Col-0, H3K9ac, rep3 |
| GSM7962244 |
PHILO, Col-0, IgG, rep1 |
| GSM7962245 |
PHILO, MYC2, ctrl, rep1 |
| GSM7962246 |
PHILO, MYC2, ctrl, rep2 |
| GSM7962247 |
PHILO, MYC2, 2hJA, rep1 |
| GSM7962248 |
PHILO, MYC2, 2hJA, rep2 |
| GSM7962249 |
PHILO, Col-0, H3K4me3, rep1 |
| GSM7962250 |
PHILO, Col-0, H3K4me3, rep2 |
| GSM7962251 |
PHILO, Col-0, H3K4me3, rep3 |
| GSM7962252 |
PHILO, Col-0, H3K27me3, rep1 |
| GSM7962253 |
PHILO, Col-0, H3K27me3, rep2 |
| GSM7962254 |
PHILO, Col-0, H3K27me3, rep3 |
| GSM7962255 |
PHILO, Col-0, H3K36me3, rep1 |
| GSM7962256 |
PHILO, Col-0, H3K36me3, rep2 |
| GSM7962257 |
PHILO, Col-0, H3K36me3, rep3 |
| GSM7962258 |
PHILO, TC, Col-0, H3K9ac, ctrl, rep1 |
| GSM7962259 |
PHILO, TC, Col-0, H3K9ac, ctrl, rep2 |
| GSM7962260 |
PHILO, TC, Col-0, H3K9ac, ctrl, rep3 |
| GSM7962261 |
PHILO, TC, Col-0, H3K9ac, 0.25hJA, rep1 |
| GSM7962262 |
PHILO, TC, Col-0, H3K9ac, 0.25hJA, rep2 |
| GSM7962263 |
PHILO, TC, Col-0, H3K9ac, 0.25hJA, rep3 |
| GSM7962264 |
PHILO, TC, Col-0, H3K9ac, 0.5hJA, rep1 |
| GSM7962265 |
PHILO, TC, Col-0, H3K9ac, 0.5hJA, rep2 |
| GSM7962266 |
PHILO, TC, Col-0, H3K9ac, 0.5hJA, rep3 |
| GSM7962267 |
PHILO, TC, Col-0, H3K9ac, 1hJA, rep1 |
| GSM7962268 |
PHILO, TC, Col-0, H3K9ac, 1hJA, rep2 |
| GSM7962269 |
PHILO, TC, Col-0, H3K9ac, 1hJA, rep3 |
| GSM7962270 |
PHILO, TC, Col-0, H3K9ac, 2hJA, rep1 |
| GSM7962271 |
PHILO, TC, Col-0, H3K9ac, 2hJA, rep2 |
| GSM7962272 |
PHILO, TC, Col-0, H3K9ac, 2hJA, rep3 |
| GSM7962273 |
PHILO, TC, Col-0, H3K9ac, WD, rep1 |
| GSM7962274 |
PHILO, TC, Col-0, H3K9ac, WD, rep2 |
| GSM7962275 |
PHILO, TC, Col-0, H3K9ac, WD, rep3 |
| GSM7962276 |
PHILO, TC, Col-0, IgG, ctrl, rep1 |
| GSM7962277 |
PHILO, TC, Col-0, IgG, ctrl, rep2 |
| GSM7962278 |
PHILO, TC, Col-0, IgG, ctrl, rep3 |
| GSM7962279 |
PHILO, TC, Col-0, H3K4me3, ctrl, rep1 |
| GSM7962280 |
PHILO, TC, Col-0, H3K4me3, ctrl, rep2 |
| GSM7962281 |
PHILO, TC, Col-0, H3K4me3, ctrl, rep3 |
| GSM7962282 |
PHILO, TC, Col-0, H3K4me3, 2hJA, rep1 |
| GSM7962283 |
PHILO, TC, Col-0, H3K4me3, 2hJA, rep2 |
| GSM7962284 |
PHILO, TC, Col-0, H3K4me3, 2hJA, rep3 |
| GSM7962285 |
PHILO, TC, Col-0, Pol II, ctrl, rep1 |
| GSM7962286 |
PHILO, TC, Col-0, Pol II, ctrl, rep2 |
| GSM7962287 |
PHILO, TC, Col-0, Pol II, ctrl, rep3 |
| GSM7962288 |
PHILO, TC, Col-0, Pol II, 2hJA, rep1 |
| GSM7962289 |
PHILO, TC, Col-0, Pol II, 2hJA, rep2 |
| GSM7962290 |
PHILO, TC, Col-0, Pol II, 2hJA, rep3 |
| GSM7962291 |
PHILO, Col-0, H3K9ac, ctrl, rep1 |
| GSM7962292 |
PHILO, Col-0, H3K9ac, ctrl, rep2 |
| GSM7962293 |
PHILO, Col-0, H3K9ac, ctrl, rep3 |
| GSM7962294 |
PHILO, Col-0, H3K9ac, 1hJA, rep1 |
| GSM7962295 |
PHILO, Col-0, H3K9ac, 1hJA, rep2 |
| GSM7962296 |
PHILO, Col-0, H3K9ac, 1hJA, rep3 |
| GSM7962297 |
PHILO, Col-0, H3K9ac, 2hJA, rep1 |
| GSM7962298 |
PHILO, Col-0, H3K9ac, 2hJA, rep2 |
| GSM7962299 |
PHILO, Col-0, H3K9ac, 2hJA, rep3 |
| GSM7962300 |
PHILO, Col-0, H3K9ac, WD, rep1 |
| GSM7962301 |
PHILO, Col-0, H3K9ac, WD, rep2 |
| GSM7962302 |
PHILO, Col-0, H3K9ac, WD, rep3 |
| GSM7962303 |
PHILO, myc2, H3K9ac, ctrl, rep1 |
| GSM7962304 |
PHILO, myc2, H3K9ac, ctrl, rep2 |
| GSM7962305 |
PHILO, myc2, H3K9ac, ctrl, rep3 |
| GSM7962306 |
PHILO, myc2, H3K9ac, 1hJA, rep1 |
| GSM7962307 |
PHILO, myc2, H3K9ac, 1hJA, rep2 |
| GSM7962308 |
PHILO, myc2, H3K9ac, 1hJA, rep3 |
| GSM7962309 |
PHILO, myc2, H3K9ac, 2hJA, rep1 |
| GSM7962310 |
PHILO, myc2, H3K9ac, 2hJA, rep2 |
| GSM7962311 |
PHILO, myc2, H3K9ac, 2hJA, rep3 |
| GSM7962312 |
PHILO, myc2, H3K9ac, WD, rep1 |
| GSM7962313 |
PHILO, myc2, H3K9ac, WD, rep2 |
| GSM7962314 |
PHILO, myc2, H3K9ac, WD, rep3 |
| GSM7962315 |
PHILO, myc234, H3K9ac, ctrl, rep1 |
| GSM7962316 |
PHILO, myc234, H3K9ac, ctrl, rep2 |
| GSM7962317 |
PHILO, myc234, H3K9ac, ctrl, rep3 |
| GSM7962318 |
PHILO, myc234, H3K9ac, 1hJA, rep1 |
| GSM7962319 |
PHILO, myc234, H3K9ac, 1hJA, rep2 |
| GSM7962320 |
PHILO, myc234, H3K9ac, 1hJA, rep3 |
| GSM7962321 |
PHILO, myc234, H3K9ac, 2hJA, rep1 |
| GSM7962322 |
PHILO, myc234, H3K9ac, 2hJA, rep2 |
| GSM7962323 |
PHILO, myc234, H3K9ac, 2hJA, rep3 |
| GSM7962324 |
PHILO, myc234, H3K9ac, WD, rep1 |
| GSM7962325 |
PHILO, myc234, H3K9ac, WD, rep2 |
| GSM7962326 |
PHILO, myc234, H3K9ac, WD, rep3 |
| GSM7962327 |
PHILO, med25, H3K9ac, ctrl, rep1 |
| GSM7962328 |
PHILO, med25, H3K9ac, ctrl, rep2 |
| GSM7962329 |
PHILO, med25, H3K9ac, ctrl, rep3 |
| GSM7962330 |
PHILO, med25, H3K9ac, 1hJA, rep1 |
| GSM7962331 |
PHILO, med25, H3K9ac, 1hJA, rep2 |
| GSM7962332 |
PHILO, med25, H3K9ac, 1hJA, rep3 |
| GSM7962333 |
PHILO, med25, H3K9ac, 2hJA, rep1 |
| GSM7962334 |
PHILO, med25, H3K9ac, 2hJA, rep2 |
| GSM7962335 |
PHILO, med25, H3K9ac, 2hJA, rep3 |
| GSM7962336 |
PHILO, med25, H3K9ac, WD, rep1 |
| GSM7962337 |
PHILO, med25, H3K9ac, WD, rep2 |
| GSM7962338 |
PHILO, med25, H3K9ac, WD, rep3 |
| GSM7962339 |
PHILO, hac1, H3K9ac, ctrl, rep1 |
| GSM7962340 |
PHILO, hac1, H3K9ac, ctrl, rep2 |
| GSM7962341 |
PHILO, hac1, H3K9ac, ctrl, rep3 |
| GSM7962342 |
PHILO, hac1, H3K9ac, 1hJA, rep1 |
| GSM7962343 |
PHILO, hac1, H3K9ac, 1hJA, rep2 |
| GSM7962344 |
PHILO, hac1, H3K9ac, 1hJA, rep3 |
| GSM7962345 |
PHILO, hac1, H3K9ac, 2hJA, rep1 |
| GSM7962346 |
PHILO, hac1, H3K9ac, 2hJA, rep2 |
| GSM7962347 |
PHILO, hac1, H3K9ac, 2hJA, rep3 |
| GSM7962348 |
PHILO, hac1, H3K9ac, WD, rep1 |
| GSM7962349 |
PHILO, hac1, H3K9ac, WD, rep2 |
| GSM7962350 |
PHILO, hac1, H3K9ac, WD, rep3 |
| GSM7962351 |
PHILO, ninja, H3K9ac, ctrl, rep1 |
| GSM7962352 |
PHILO, ninja, H3K9ac, ctrl, rep2 |
| GSM7962353 |
PHILO, ninja, H3K9ac, ctrl, rep3 |
| GSM7962354 |
PHILO, ninja, H3K9ac, 1hJA, rep1 |
| GSM7962355 |
PHILO, ninja, H3K9ac, 1hJA, rep2 |
| GSM7962356 |
PHILO, ninja, H3K9ac, 1hJA, rep3 |
| GSM7962357 |
PHILO, ninja, H3K9ac, 2hJA, rep1 |
| GSM7962358 |
PHILO, ninja, H3K9ac, 2hJA, rep2 |
| GSM7962359 |
PHILO, ninja, H3K9ac, 2hJA, rep3 |
| GSM7962360 |
PHILO, ninja, H3K9ac, WD, rep1 |
| GSM7962361 |
PHILO, ninja, H3K9ac, WD, rep2 |
| GSM7962362 |
PHILO, ninja, H3K9ac, WD, rep3 |
| GSM7962363 |
PHILO, hda6, H3K9ac, ctrl, rep1 |
| GSM7962364 |
PHILO, hda6, H3K9ac, ctrl, rep2 |
| GSM7962365 |
PHILO, hda6, H3K9ac, ctrl, rep3 |
| GSM7962366 |
PHILO, hda6, H3K9ac, 1hJA, rep1 |
| GSM7962367 |
PHILO, hda6, H3K9ac, 1hJA, rep2 |
| GSM7962368 |
PHILO, hda6, H3K9ac, 1hJA, rep3 |
| GSM7962369 |
PHILO, hda6, H3K9ac, 2hJA, rep1 |
| GSM7962370 |
PHILO, hda6, H3K9ac, 2hJA, rep2 |
| GSM7962371 |
PHILO, hda6, H3K9ac, 2hJA, rep3 |
| GSM7962372 |
PHILO, hda6, H3K9ac, WD, rep1 |
| GSM7962373 |
PHILO, hda6, H3K9ac, WD, rep2 |
| GSM7962374 |
PHILO, hda6, H3K9ac, WD, rep3 |
| GSM7962375 |
PHILO, tpltpr1tpr4, H3K9ac, ctrl, rep1 |
| GSM7962376 |
PHILO, tpltpr1tpr4, H3K9ac, ctrl, rep2 |
| GSM7962377 |
PHILO, tpltpr1tpr4, H3K9ac, ctrl, rep3 |
| GSM7962378 |
PHILO, tpltpr1tpr4, H3K9ac, 1hJA, rep1 |
| GSM7962379 |
PHILO, tpltpr1tpr4, H3K9ac, 1hJA, rep2 |
| GSM7962380 |
PHILO, tpltpr1tpr4, H3K9ac, 1hJA, rep3 |
| GSM7962381 |
PHILO, tpltpr1tpr4, H3K9ac, 2hJA, rep1 |
| GSM7962382 |
PHILO, tpltpr1tpr4, H3K9ac, 2hJA, rep2 |
| GSM7962383 |
PHILO, tpltpr1tpr4, H3K9ac, 2hJA, rep3 |
| GSM7962384 |
PHILO, tpltpr1tpr4, H3K9ac, WD, rep1 |
| GSM7962385 |
PHILO, tpltpr1tpr4, H3K9ac, WD, rep2 |
| GSM7962386 |
PHILO, tpltpr1tpr4, H3K9ac, WD, rep3 |
| GSM7962387 |
PHILO, jazD, H3K9ac, ctrl, rep1 |
| GSM7962388 |
PHILO, jazD, H3K9ac, ctrl, rep2 |
| GSM7962389 |
PHILO, jazD, H3K9ac, ctrl, rep3 |
| GSM7962390 |
PHILO, jazD, H3K9ac, 1hJA, rep1 |
| GSM7962391 |
PHILO, jazD, H3K9ac, 1hJA, rep2 |
| GSM7962392 |
PHILO, jazD, H3K9ac, 1hJA, rep3 |
| GSM7962393 |
PHILO, jazD, H3K9ac, 2hJA, rep1 |
| GSM7962394 |
PHILO, jazD, H3K9ac, 2hJA, rep2 |
| GSM7962395 |
PHILO, jazD, H3K9ac, 2hJA, rep3 |
| GSM7962396 |
PHILO, jazD, H3K9ac, WD, rep1 |
| GSM7962397 |
PHILO, jazD, H3K9ac, WD, rep2 |
| GSM7962398 |
PHILO, jazD, H3K9ac, WD, rep3 |
| GSM7962399 |
PHILO, Col-0, IgG, ctrl, rep1 |
| GSM7962400 |
PHILO, Col-0, IgG, ctrl, rep2 |
| GSM7962401 |
PHILO, Col-0, IgG, ctrl, rep3 |
| GSM7962402 |
Set1, Col-0, ctrl, rep1 |
| GSM7962403 |
Set1, Col-0, ctrl, rep2 |
| GSM7962404 |
Set1, Col-0, 2hJA, rep1 |
| GSM7962405 |
Set1, Col-0, 2hJA, rep2 |
| GSM7962406 |
Set2, Col-0, ctrl, rep1 |
| GSM7962407 |
Set2, Col-0, ctrl, rep2 |
| GSM7962408 |
Set2, Col-0, ctrl, rep3 |
| GSM7962409 |
Set2, Col-0, 2hJA, rep1 |
| GSM7962410 |
Set2, Col-0, 2hJA, rep2 |
| GSM7962411 |
Set2, Col-0, 2hJA, rep3 |
| GSM8267259 |
PHILO, Arabidopsis, H3K9ac, sonic_0.1g, rep1 |
| GSM8267260 |
PHILO, Arabidopsis, H3K9ac, sonic_0.1g, rep2 |
| GSM8267261 |
PHILO, Arabidopsis, H3K9ac, MNase_0.1g, rep1 |
| GSM8267262 |
PHILO, Arabidopsis, H3K9ac, MNase_0.1g, rep2 |
| GSM8267263 |
PHILO, Arabidopsis, H3K9ac, MNase_Single_seedling_0.1g, rep1 |
| GSM8267264 |
PHILO, Arabidopsis, H3K9ac, MNase_Single_seedling_0.1g, rep2 |
| GSM8267265 |
PHILO, Arabidopsis, H3K9ac, MNase_0.005g, rep1 |
| GSM8267266 |
PHILO, Arabidopsis, H3K9ac, MNase_0.005g, rep2 |
| GSM8267267 |
PHILO, Arabidopsis, IgG, MNase, rep1 |
| GSM8267268 |
PHILO, Arabidopsis, IgG, MNase, rep2 |
| GSM8267269 |
PHILO, Tomato, H3K4me3, rep1 |
| GSM8267270 |
PHILO, Tomato, H3K4me3, rep2 |
| GSM8267271 |
PHILO, Tomato, H3K4me3, rep3 |
| GSM8267272 |
PHILO, Tomato, IgG, rep1 |
| GSM8267273 |
PHILO, Tomato, IgG, rep2 |
| GSM8267274 |
PHILO, Tomato, IgG, rep3 |
| GSM8267275 |
PHILO, Tomato, H3K9ac, ctrl, rep1 |
| GSM8267276 |
PHILO, Tomato, H3K9ac, ctrl, rep2 |
| GSM8267277 |
PHILO, Tomato, H3K9ac, ctrl, rep3 |
| GSM8267278 |
PHILO, Tomato, H3K9ac, 2hJA, rep1 |
| GSM8267279 |
PHILO, Tomato, H3K9ac, 2hJA, rep2 |
| GSM8267280 |
PHILO, Tomato, H3K9ac, 2hJA, rep3 |
| GSM8267281 |
PHILO, hemp, H3K4me3, set2, rep1 |
| GSM8267282 |
PHILO, hemp, H3K4me3, set2, rep2 |
| GSM8267283 |
PHILO, hemp, H3K4me3, set2, rep3 |
| GSM8267284 |
PHILO, hemp, IgG, set2, rep1 |
| GSM8267285 |
PHILO, hemp, IgG, set2, rep2 |
| GSM8267286 |
PHILO, hemp, IgG, set2, rep3 |
| GSM8556081 |
PHILO, Arabidopsis, H3K9ac, 0.5M, rep1 |
| GSM8556082 |
PHILO, Arabidopsis, H3K9ac, 0.5M, rep2 |
| GSM8556083 |
PHILO, Arabidopsis, H3K9ac, 1M, rep1 |
| GSM8556084 |
PHILO, Arabidopsis, H3K9ac, 1M, rep2 |
| GSM8556085 |
PHILO, Arabidopsis, H3K9ac, 2M, rep1 |
| GSM8556086 |
PHILO, Arabidopsis, H3K9ac, 2M, rep2 |
| GSM8556087 |
PHILO, Arabidopsis, H3K9ac, 5M, rep1 |
| GSM8556088 |
PHILO, Arabidopsis, H3K9ac, 5M, rep2 |
| GSM8556089 |
PHILO, Arabidopsis, H3K9ac, 10M, rep1 |
| GSM8556090 |
PHILO, Arabidopsis, H3K9ac, 10M, rep2 |
| GSM8556091 |
PHILO, Arabidopsis, H3K9ac, 10cyc, rep1 |
| GSM8556092 |
PHILO, Arabidopsis, H3K9ac, 10cyc, rep2 |
| GSM8556093 |
PHILO, Arabidopsis, H3K9ac, 12cyc, rep1 |
| GSM8556094 |
PHILO, Arabidopsis, H3K9ac, 12cyc, rep2 |
| GSM8556095 |
PHILO, Arabidopsis, H3K9ac, 14cyc, rep1 |
| GSM8556096 |
PHILO, Arabidopsis, H3K9ac, 14cyc, rep2 |
| GSM8556097 |
PHILO, Arabidopsis, H3K9ac, eChIP rep1 |
| GSM8556098 |
PHILO, Arabidopsis, H3K9ac, eChIP rep2 |
| GSM8556099 |
PHILO, Arabidopsis, H3K9ac, Sonic_0.001g, rep1 |
| GSM8556100 |
PHILO, Arabidopsis, H3K9ac, Sonic_0.001g, rep2 |
| GSM8556101 |
PHILO, Arabidopsis, H3K9ac, 500K, rep1 |
| GSM8556102 |
PHILO, Arabidopsis, H3K9ac, 500K, rep2 |
| GSM8556103 |
PHILO, Arabidopsis, H3K9ac, 100K, rep1 |
| GSM8556104 |
PHILO, Arabidopsis, H3K9ac, 100K, rep2 |
| GSM8556105 |
PHILO, Arabidopsis, H3K9ac, 20K, rep1 |
| GSM8556106 |
PHILO, Arabidopsis, H3K9ac, 20K, rep2 |
| GSM8556107 |
CUT&Tag, Arabidopsis, H3K9ac, rep1 |
| GSM8556108 |
CUT&Tag, Arabidopsis, H3K9ac, rep2 |
|
| This SuperSeries is composed of the following SubSeries:
|
| GSE249736 |
High-throughput capture of transcription factor-driven chromatin dynamics using PHILO ChIP-seq (ChIP-seq) |
| GSE249737 |
High-throughput capture of transcription factor-driven chromatin dynamics using PHILO ChIP-seq (RNA-Seq) |
| GSE267486 |
High-throughput capture of transcription factor-driven chromatin dynamics using PHILO [ChIP-seq 3] |
| GSE278853 |
High-throughput capture of transcription factor-driven chromatin dynamics using PHILO ChIP-seq [ChIP-seq 4] |
|
| Relations |
| BioProject |
PRJNA1050262 |
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