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Series GSE244906 Query DataSets for GSE244906
Status Public on May 01, 2024
Title To survey ncRNAs that associate with Lsd1 or Bre1 complexes through RIP experiments
Organism Drosophila melanogaster
Experiment type Other
Summary These paired RIP experiments were designed to determine specific ncRNAs that associated with either Lsd1 (Lysine specific demethylase 1) complex or Bre1.
 
Overall design The RIP experiments were done using fly ovarian lysate collected from young females (<12 hr post eclosion). Specifically, Lsd1-RIP and Bre1-RIP were paired with a IgG-RIP ereaction for normalizing the abundance of individual transcripts.
 
Contributor(s) Lee M
Citation(s) 38655201
Submission date Oct 08, 2023
Last update date May 02, 2024
Contact name Ming-Chia Lee
E-mail(s) [email protected]
Organization name National Yang Ming Chiao Tung University
Department Department of Life Sciences and Institute of Genome Sciences
Lab Lab of Molecular Epigenetics
Street address Library, Info & Research Bldg, Rm 904 #155, Sec. 2, Li-Nong St
City Taiepi
ZIP/Postal code 112
Country Taiwan
 
Platforms (2)
GPL17275 Illumina HiSeq 2500 (Drosophila melanogaster)
GPL19132 Illumina NextSeq 500 (Drosophila melanogaster)
Samples (6)
GSM7831944 Exp#1_IgG_RIP_0317
GSM7831945 Exp#1_Lsd1_RIP_0317
GSM7831946 Exp#1_Bre1_RIP_0317
Relations
BioProject PRJNA1025898

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE244906_RAW.tar 24.4 Mb (http)(custom) TAR (of TXT, XLSX)
SRA Run SelectorHelp
Raw data are available in SRA

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