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| Status |
Public on Aug 08, 2024 |
| Title |
Small proteome of Methanosarcina mazei: Insights from Ribo-seq and peptidomics under different nitrogen conditions |
| Organism |
Methanosarcina mazei Go1 |
| Experiment type |
Expression profiling by high throughput sequencing
Other
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| Summary |
We used ribosome profiling (Ribo-seq) to generate a translatome map for the archaeon M. mazei under two growth conditions. The analysis of the datasets allowed to generate a high confidence inventory of small proteins in the model archaeon M. mazei and their regulation under nitrogen limiting conditions.
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| Overall design |
Ribo-seq and RNA-seq experiments to study the transcriptome and the translatome of M. mazei in two growth conditions.
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| Contributor(s) |
Jordan B, Tufail MA, Hadjeras L, Gelhausen R, Cassidy L, Habenicht T, Gutt M, Backofen R, Tholey A, Sharma CM, Schmitz RA |
| Citation(s) |
39370430 |
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| Submission date |
Aug 10, 2023 |
| Last update date |
Nov 06, 2024 |
| Contact name |
Rick Gelhausen |
| E-mail(s) |
[email protected]
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| Organization name |
Albert-Ludwigs-University Freiburg
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| Department |
Department of Computer Science
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| Lab |
Bioinformatics Group (AG Backofen)
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| Street address |
Georges-Köhler-Allee 106
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| City |
Freiburg |
| State/province |
Baden Württemberg |
| ZIP/Postal code |
79110 |
| Country |
Germany |
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| Platforms (1) |
| GPL33665 |
NextSeq 550 (Methanosarcina mazei Go1) |
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| Samples (8)
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| GSM7703759 |
NitrogenMinus, RNA-seq, Replicate 2 |
| GSM7703760 |
NitrogenPlus, Ribo-seq, Replicate 1 |
| GSM7703761 |
NitrogenPlus, Ribo-seq, Replicate 2 |
| GSM7703762 |
NitrogenPlus, RNA-seq, Replicate 1 |
| GSM7703763 |
NitrogenPlus, RNA-seq, Replicate 2 |
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| Relations |
| BioProject |
PRJNA1004312 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE240615_RAW.tar |
78.6 Mb |
(http)(custom) |
TAR (of BW) |
SRA Run Selector |
| Raw data are available in SRA |
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