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Series GSE239680 Query DataSets for GSE239680
Status Public on Jul 29, 2024
Title BET protein-dependent E2F pathway confers bell-shaped type resistance to tankyrase inhibitors in APC-mutated colorectal cancer [CUT&RUN]
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary In colorectal cancer (CRC), WNT/β-catenin signaling is aberrantly activated mainly by loss-of-function mutations in adenomatous polyposis coli (APC) and is involved in tumor progression. Tankyrase inhibitors, which suppress WNT/β-catenin signaling, are under pre-clinical and clinical trials, while their resistance mechanisms remain unclear. In this study, we established tankyrase inhibitor-resistant CRC cells, JC73-RK100, from APC-mutated patient-derived CRC cells. JC73-RK100 cells and several CRC cells were sensitive to tankyrase inhibitors at low concentrations but were resistant at high concentrations (i.e., bell-shaped dose response: BSDR). Mechanistically, tankyrase inhibitors at high concentrations promoted BRD3/4-dependent E2F target gene transcription and over-activated cell cycle progression in the BSDR cells. BET inhibitors canceled the bell-shaped dose response to tankyrase inhibitors. Taken together, these observations suggest that combination of tankyrase and BET inhibitors would be a useful therapeutic approach to overcome a subset of resistance to tankyrase inhibitors.
 
Overall design Examination of histone modification (H3K27ac) and chromatin associated proteins (BRD3, BRD4) using CUT&RUN in colorectal cancer PDC JC73, JC73-RK100 and JC21 cells treated with or without tankyrase inhibitor RK-582.
 
Contributor(s) Morino S, Mashima T, Seimiya H
Citation(s) 38216082
Submission date Jul 31, 2023
Last update date Jul 30, 2024
Contact name Shun Morino
E-mail(s) [email protected]
Organization name JFCR
Street address 3-8-31, Ariake, Koto-ku
City Tokyo
ZIP/Postal code 135-8550
Country Japan
 
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (36)
GSM7669917 JC73 DMSO Input
GSM7669918 JC73 RK-582 30 nM Input
GSM7669919 JC73 RK-582 3 µM Input
This SubSeries is part of SuperSeries:
GSE239683 BET protein-dependent E2F pathway confers bell-shaped type resistance to tankyrase inhibitors in APC-mutated colorectal cancer
Relations
BioProject PRJNA1000550

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE239680_RAW.tar 2.0 Gb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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