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GEO accession:
Series GSE227884
Query DataSets for GSE227884
Status
Public on May 02, 2023
Title
Protein-intrinsic properties and context-dependent effects regulate pioneer-factor binding and function
Organism
Drosophila melanogaster
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
37066406
Submission date
Mar 21, 2023
Last update date
Oct 23, 2023
Contact name
Melissa M Harrison
E-mail(s)
[email protected]
Organization name
University of Wisconsin Madison
Department
Biomolecular Chemistry
Lab
1135 Biochemical Sciences Bldg
Street address
420 Henry Mall
City
Madison
State/province
WI
ZIP/Postal code
53706
Country
USA
Platforms (3)
GPL19132
Illumina NextSeq 500 (Drosophila melanogaster)
GPL21306
Illumina HiSeq 4000 (Drosophila melanogaster)
GPL25244
Illumina NovaSeq 6000 (Drosophila melanogaster)
Samples (190)
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More...
GSM7110084
FL_ATAC_S2-WT_100uM_rep1
GSM7110085
FL_ATAC_S2-WT_100uM_rep2
GSM7110086
S2-Grh_100uM_rep1
GSM7110087
S2-Grh_100uM_rep2
GSM7110088
S2-Zld_1000uM_rep1
GSM7110089
S2-Zld_1000uM_rep2
GSM7110090
S2-WT_1000uM_rep1
GSM7110091
S2-WT_1000uM_rep2
GSM7110092
Twi_ATAC_S2-WT_40uM_rep1
GSM7110093
Twi_ATAC_S2-WT_40uM_rep2
GSM7110094
S2-Twi_40uM_rep1
GSM7110095
S2-Twi_40uM_rep2
GSM7110096
DBD_ATAC_S2-WT_20uM_rep1
GSM7110097
DBD_ATAC_S2-WT_20uM_rep2
GSM7110098
S2-Grh-DBD_20uM_rep1
GSM7110099
S2-Grh-DBD_20uM_rep2
GSM7110100
DBD_ATAC_S2-WT_100uM_rep1
GSM7110101
DBD_ATAC_S2-WT_100uM_rep2
GSM7110102
S2-Zld-DBD_100uM_rep1
GSM7110103
S2-Zld-DBD_100uM_rep2
GSM7110104
titration_S2-Zld_0uM_rep1
GSM7110105
titration_S2-Zld_500uM_rep1
GSM7110106
titration_S2-Zld_1000uM_rep1
GSM7110107
titration_S2-Zld_1500uM_rep1
GSM7110108
titration_S2-Grh_0uM_rep1
GSM7110109
titration_S2-Grh_25uM_rep1
GSM7110110
titration_S2-Grh_100uM_rep1
GSM7110111
titration_S2-Grh_400uM_rep1
GSM7110112
titration_S2-HA-Twi_0uM_rep1
GSM7110113
titration_S2-HA-Twi_10uM_rep1
GSM7110114
titration_S2-HA-Twi_40uM_rep1
GSM7110115
titration_S2-HA-Twi_160uM_rep1
GSM7110116
titration_S2-Zld_0uM_rep2
GSM7110117
titration_S2-Zld_500uM_rep2
GSM7110118
titration_S2-Zld_1000uM_rep2
GSM7110119
titration_S2-Zld_1500uM_rep2
GSM7110120
titration_S2-Grh_0uM_rep2
GSM7110121
titration_S2-Grh_25uM_rep2
GSM7110122
titration_S2-Grh_100uM_rep2
GSM7110123
titration_S2-Grh_400uM_rep2
GSM7110124
titration_S2-HA-Twi_0uM_rep2
GSM7110125
titration_S2-HA-Twi_10uM_rep2
GSM7110126
titration_S2-HA-Twi_40uM_rep2
GSM7110127
titration_S2-HA-Twi_160uM_rep2
GSM7110128
S2-Zld_aZld_0H_rep1
GSM7110129
S2-Zld_aZld_0H_rep2
GSM7110130
S2-Zld_aZld_4H_rep1
GSM7110131
S2-Zld_aZld_4H_rep2
GSM7110132
S2-Zld_aZld_12H_rep1
GSM7110133
S2-Zld_aZld_12H_rep2
GSM7110134
S2-Zld_aZld_24H_rep1
GSM7110135
S2-Zld_aZld_24H_rep2
GSM7110136
S2-Zld_aZld_48H_rep1
GSM7110137
S2-Zld_aZld_48H_rep2
GSM7110138
S2-Zld_IgG_48H_rep1
GSM7110139
S2-Zld_IgG_48H_rep2
GSM7110140
S2-Grh_aGrh_0H_rep1
GSM7110141
S2-Grh_aGrh_0H_rep2
GSM7110142
S2-Grh_aGrh_4H_rep1
GSM7110143
S2-Grh_aGrh_4H_rep2
GSM7110144
S2-Grh_aGrh_12H_rep1
GSM7110145
S2-Grh_aGrh_12H_rep2
GSM7110146
S2-Grh_aGrh_24H_rep1
GSM7110147
S2-Grh_aGrh_24H_rep2
GSM7110148
S2-Grh_aGrh_48H_rep1
GSM7110149
S2-Grh_aGrh_48H_rep2
GSM7110150
S2-Grh_IgG_48H_rep1
GSM7110151
S2-Grh_IgG_48H_rep2
GSM7110152
S2-Zld_DMSO_aH3K27me3_rep1
GSM7110153
S2-Zld_Taz_aH3K27me3_rep1
GSM7110154
S2-Grh_DMSO_aH3K27me3_rep1
GSM7110155
S2-Grh_Taz_aH3K27me3_rep1
GSM7110156
S2-HA-Twi_DMSO_aH3K27me3_rep1
GSM7110157
S2-HA-Twi_Taz_aH3K27me3_rep1
GSM7110158
S2-Zld_DMSO_IgG_rep1
GSM7110159
S2-Grh_DMSO_IgG_rep1
GSM7110160
S2-HA-Twi_DMSO_IgG_rep1
GSM7110161
S2-Zld_DMSO_aH3K27me3_rep2
GSM7110162
S2-Zld_Taz_aH3K27me3_rep2
GSM7110163
S2-Grh_DMSO_aH3K27me3_rep2
GSM7110164
S2-Grh_Taz_aH3K27me3_rep2
GSM7110165
S2-HA-Twi_DMSO_aH3K27me3_rep2
GSM7110166
S2-HA-Twi_Taz_aH3K27me3_rep2
GSM7110167
S2-Zld_DMSO_IgG_rep2
GSM7110168
S2-Grh_DMSO_IgG_rep2
GSM7110169
S2-HA-Twi_DMSO_IgG_rep2
GSM7110170
S2-Zld_aZld_IP_rep1
GSM7110171
S2-Grh_aGrh_IP_rep1
GSM7110172
S2-Grh_aGrh_IP_rep2
GSM7110173
S2-WT_aZld_IP_rep1
GSM7110174
S2-WT_aZld_IP_rep2
GSM7110175
S2-WT_aGrh_IP_rep1
GSM7110176
S2-WT_aGrh_IP_rep2
GSM7110177
S2-Zld_aZld_IP_rep2
GSM7110178
S2-WT_aZld_input_rep1
GSM7110179
S2-WT_aZld_input_rep2
GSM7110180
S2-Zld_aIgG_input_rep1
GSM7110181
S2-Grh_aIgG_input_rep1
GSM7110182
S2-WT_aGrh_input_rep1 a
GSM7110183
S2-WT_aGrh_input_rep1 b
GSM7110184
S2-WT_aGrh_input_rep2 a
GSM7110185
S2-WT_aGrh_input_rep2 b
GSM7110186
S2-Twi_aTwi_IP_rep1
GSM7110187
S2-Twi_aTwi_IP_rep2
GSM7110188
S2-Zld-DBD_aZld_IP_rep1
GSM7110189
S2-Zld-DBD_aZld_IP_rep2
GSM7110190
S2-Grh-DBD_aGrh_IP_rep1
GSM7110191
S2-Grh-DBD_aGrh_IP_rep2
GSM7110192
S2-Zld-0uM_aZld_IP_rep1
GSM7110193
S2-Zld-500uM_aZld_IP_rep1
GSM7110194
S2-Zld-1000uM_aZld_IP_rep1
GSM7110195
S2-Zld-1500uM_aZld_IP_rep1
GSM7110196
S2-Grh-0uM_aGrh_IP_rep1
GSM7110197
S2-Grh-25uM_aGrh_IP_rep1
GSM7110198
S2-Grh-100uM_aGrh_IP_rep1
GSM7110199
S2-Grh-400uM_aGrh_IP_rep1
GSM7110200
S2-HA-Twi-0uM_aHA_IP_rep1
GSM7110201
S2-HA-Twi-10uM_aHA_IP_rep1
GSM7110202
S2-HA-Twi-40uM_aHA_IP_rep1
GSM7110203
S2-HA-Twi-160uM_aHA_IP_rep1
GSM7110204
S2-Grh-0uM_aGrh_IP_rep2
GSM7110205
S2-Grh-25uM_aGrh_IP_rep2
GSM7110206
S2-Grh-100uM_aGrh_IP_rep2
GSM7110207
S2-Grh-400uM_aGrh_IP_rep2
GSM7110208
S2-HA-Twi-0uM_aHA_IP_rep2
GSM7110209
S2-HA-Twi-10uM_aHA_IP_rep2
GSM7110210
S2-HA-Twi-40uM_aHA_IP_rep2
GSM7110211
S2-HA-Twi-160uM_aHA_IP_rep2
GSM7110212
S2-Zld-0uM_aZld_IP_rep2
GSM7110213
S2-Zld-500uM_aZld_IP_rep2
GSM7110214
S2-Zld-1000uM_aZld_IP_rep2
GSM7110215
S2-Zld-1500uM_aZld_IP_rep2
GSM7110216
S2-Zld_DMSO_aZld_rep1
GSM7110217
S2-Zld_taz_aZld_rep1
GSM7110218
S2-Grh_DMSO_aGrh_rep1
GSM7110219
S2-Grh_taz_aGrh_rep1
GSM7110220
S2-HA-Twi_DMSO_aHA_rep1
GSM7110221
S2-HA-Twi_taz_aHA_rep1
GSM7110222
S2-Zld_DMSO_aZld_rep2
GSM7110223
S2-Zld_taz_aZld_rep2
GSM7110224
S2-Grh_DMSO_aGrh_rep2
GSM7110225
S2-Grh_taz_aGrh_rep2
GSM7110226
S2-HA-Twi_DMSO_aHA_rep2
GSM7110227
S2-HA-Twi_taz_aHA_rep2
GSM7110228
S2-WT_aTwi_IP_rep1
GSM7110229
S2-WT_aTwi_IP_rep2
GSM7110230
S2-WT_aHA_IP_rep1
GSM7110231
S2-WT_aHA_IP_rep2
GSM7110232
S2-WT_aTwi_input_rep1
GSM7110233
S2-WT_aTwi_input_rep2
GSM7110234
S2-WT_aHA_input_rep1
GSM7110235
S2-WT_aHA_input_rep2
GSM7110236
S2-WT_1000uM_rep1
GSM7110237
S2-WT_1000uM_rep2
GSM7110238
S2-WT_100uM_rep1
GSM7110239
S2-WT_100uM_rep2
GSM7110240
S2-WT_noCuSO4_rep1
GSM7110241
S2-WT_noCuSO4_rep2
GSM7110242
S2-Zld_1000mM_rep1
GSM7110243
S2-Zld_1000mM_rep2
GSM7110244
S2-Zld_noCuSO4_rep1
GSM7110245
S2-Zld_noCuSO4_rep2
GSM7110246
S2-Grh_100mM_rep1
GSM7110247
S2-Grh_100mM_rep2
GSM7110248
S2-Grh_noCuSO4_rep1
GSM7110249
S2-Grh_noCuSO4_rep2
GSM7110250
S2-WT_40uM_rep1
GSM7110251
S2-WT_40uM_rep2
GSM7110252
S2-Twi_40uM_rep1
GSM7110253
S2-Twi_40uM_rep2
GSM7367011
S2-Zld_aIgG_IP_rep1
GSM7367012
S2-Grh_aIgG_IP_rep1
GSM7849841
titration_S2-Zld-DBD_400_rep1
GSM7849842
titration_S2-Zld-DBD_400_rep2
GSM7849843
titration_S2-Grh-DBD_80_rep1
GSM7849844
titration_S2-Grh-DBD_80_rep2
GSM7849845
S2-Zld-DBD_aZld_100uM_rep1
GSM7849846
S2-Zld-DBD_aZld_100uM_rep2
GSM7849847
S2-Zld-DBD_aZld_400uM_rep1
GSM7849848
S2-Zld-DBD_aZld_400uM_rep2
GSM7849849
S2-Grh-DBD_aGrh_20uM_rep1
GSM7849850
S2-Grh-DBD_aGrh_20uM_rep2
GSM7849851
S2-Grh-DBD_aGrh_80uM_rep1
GSM7849852
S2-Grh-DBD_aGrh_80uM_rep2
GSM7849853
brain_brat_aZld_rep1
GSM7849854
brain_brat_aZld_rep2
GSM7849855
brain_UAS-HA-Zld_aZld_rep1
GSM7849856
brain_UAS-HA-Zld_aZld_rep2
GSM7851394
brain_brat_IgG_rep1
GSM7851395
brain_brat_IgG_rep2
This SuperSeries is composed of the following SubSeries:
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More...
GSE227880
Protein-intrinsic properties and context-dependent effects regulate pioneer-factor binding and function [ATAC-Seq]
GSE227881
Protein-intrinsic properties and context-dependent effects regulate pioneer-factor binding and function [CUT&RUN]
GSE227882
Protein-intrinsic properties and context-dependent effects regulate pioneer-factor binding and function [ChIP-Seq]
GSE227883
Protein-intrinsic properties and context-dependent effects regulate pioneer-factor binding and function [RNA-Seq]
Relations
BioProject
PRJNA947223
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SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
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TXT
Supplementary data files not provided
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