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| Status |
Public on Mar 31, 2023 |
| Title |
Effect of Sphingomyelin d18:1/14:0 (S14) on gene expression in macrophages |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
We compared the effect of Sphingomyelin d18:1/14:0 (S14) and Lipopolysaccharide (LPS) on the gene expression in mouse macrophages at different timepoints
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| Overall design |
RNA-Seq analysis was performed on bone marrow-derived macrophages (isolated from B57BL/6J wild-type mice; n=4) stimulated for 3 h or 18 h with S14 or LPS or left untreated as control.
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| Contributor(s) |
Gorki FS |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
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| Submission date |
Dec 29, 2022 |
| Last update date |
Mar 31, 2023 |
| Contact name |
Friederike Sophie Gorki |
| Organization name |
Institute of Innate Immunity
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| Street address |
Venusberg-Campus 1
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| City |
Bonn |
| ZIP/Postal code |
53127 |
| Country |
Germany |
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| Platforms (1) |
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| Samples (24)
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| GSM6909391 |
Sample 4 - UT, 3h, rep4 |
| GSM6909392 |
Sample 5 - S14, 3h, rep1 |
| GSM6909393 |
Sample 6 - S14, 3h, rep2 |
| GSM6909394 |
Sample 7 - S14, 3h, rep3 |
| GSM6909395 |
Sample 8 - S14, 3h, rep4 |
| GSM6909396 |
Sample 9 - LPS, 3h, rep1 |
| GSM6909397 |
Sample 10 - LPS, 3h, rep2 |
| GSM6909398 |
Sample 11 - LPS, 3h, rep3 |
| GSM6909399 |
Sample 12 - LPS, 3h, rep4 |
| GSM6909400 |
Sample 13 - UT, 18h, rep1 |
| GSM6909401 |
Sample 14 - UT, 18h, rep2 |
| GSM6909402 |
Sample 15 - UT, 18h, rep3 |
| GSM6909403 |
Sample 16 - UT, 18h, rep4 |
| GSM6909404 |
Sample 17 - S14, 18h, rep1 |
| GSM6909405 |
Sample 18 - S14, 18h, rep2 |
| GSM6909406 |
Sample 19 - S14, 18h, rep3 |
| GSM6909407 |
Sample 20 - S14, 18h, rep4 |
| GSM6909408 |
Sample 21 - LPS, 18h, rep1 |
| GSM6909409 |
Sample 22 - LPS, 18h, rep2 |
| GSM6909410 |
Sample 23 - LPS, 18h, rep3 |
| GSM6909411 |
Sample 24 - LPS, 18h, rep4 |
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| Relations |
| BioProject |
PRJNA916714 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE221910_normalized_counts.tsv.gz |
2.3 Mb |
(ftp)(http) |
TSV |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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