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| Status |
Public on Jun 21, 2024 |
| Title |
Systematic Study on the Three-Dimensional Genome of Escherichia Coli and Its Thermal Adaptation Mechanism (3C-Seq) |
| Organism |
Escherichia coli str. K-12 substr. MG1655 |
| Experiment type |
Other
|
| Summary |
Chromosome conformation capture and sequencing experiments were carried out at 37℃ and 45℃ for E. coli in logarithmic phase and stable phase, respectively. Three-dimensional DNA interaction data of E. coli under four different growth conditions and control group were obtained
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| Overall design |
The 3D genomic data of Escherichia coli cultured at 45℃ and 37℃ to log phase and stable phase were extracted and cross-compared
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| |
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| Contributor(s) |
Wang X, Ma B |
| Citation(s) |
38930611 |
| |
| Submission date |
Aug 22, 2022 |
| Last update date |
Jul 31, 2024 |
| Contact name |
Xuting Wang |
| E-mail(s) |
[email protected]
|
| Phone |
18827449994
|
| Organization name |
HuaZhong Agriculture University
|
| Street address |
hongshan
|
| City |
wuhan |
| State/province |
hubei |
| ZIP/Postal code |
430070 |
| Country |
China |
| |
|
| Platforms (1) |
| GPL24659 |
Illumina HiSeq 4000 (Escherichia coli str. K-12 substr. MG1655) |
|
| Samples (10)
|
| GSM6503004 |
3C-seq of E. coli wt cells in early logarithmic phase-0 37°C -Replicate 1 |
| GSM6503005 |
3C-seq of E. coli wt cells in early logarithmic phase-0 37°C -Replicate 2 |
| GSM6503006 |
3C-seq of E. coli wt cells in early logarithmic phase 37°C -Replicate 1 |
| GSM6503007 |
3C-seq of E. coli wt cells in early logarithmic phase 37°C -Replicate 2 |
| GSM6503008 |
3C-seq of E. coli wt cells in stationary phase 37°C -Replicate 1 |
| GSM6503009 |
3C-seq of E. coli wt cells in stationary phase 37°C -Replicate 2 |
| GSM6503010 |
3C-seq of E. coli wt cells in early logarithmic phase 45°C -Replicate 1 |
| GSM6503011 |
3C-seq of E. coli wt cells in early logarithmic phase 45°C -Replicate 2 |
| GSM6503012 |
3C-seq of E. coli wt cells in stationary phase 45°C -Replicate 1 |
| GSM6503013 |
3C-seq of E. coli wt cells in stationary phase 45°C -Replicate 2 |
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| This SubSeries is part of SuperSeries: |
| GSE211825 |
Spatial Chromosome Organization and Adaptation of Escherichia coli under Heat Stress |
|
| Relations |
| BioProject |
PRJNA872174 |
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