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| Status |
Public on Jan 03, 2023 |
| Title |
HSFA1a controls plant heat stress response through its action on the 3D chromatin reorganization of enhancer-promoter interactions [Hi-C] |
| Organism |
Solanum lycopersicum |
| Experiment type |
Other
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| Summary |
We investigated the role of HSFA1a, a master regulator of heat stress response, in this reorganization through promotion of the formation of promoter/enhancer chromatin loops.
To map the three-dimensional chromatin interactions we performed in situ Hi-C, a genome-wide method that detects DNA-DNA physical interactions.
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| Overall design |
Comparative interaction profiling analysis of in situ Hi-C data for tomato M82 wild type after 0h, 1h and 6h of heat stress. 2 biological replicates for each time point.
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| Contributor(s) |
Huang Y, Benhamed M, Latrasse D, An J, Sicar S |
| Citation(s) |
36709329 |
| |
| Submission date |
Jun 17, 2022 |
| Last update date |
Feb 10, 2023 |
| Contact name |
Jing An |
| Organization name |
Universite Paris Saclay
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| Street address |
630 Rue Noetzlin
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| City |
Paris |
| ZIP/Postal code |
91190 |
| Country |
France |
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| Platforms (1) |
| GPL21762 |
Illumina NextSeq 500 (Solanum lycopersicum) |
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| Samples (6)
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| This SubSeries is part of SuperSeries: |
| GSE206365 |
HSFA1a controls plant heat stress response through its action on the 3D chromatin reorganization of enhancer-promoter interactions. |
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| Relations |
| BioProject |
PRJNA850382 |
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