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| Status |
Public on May 06, 2022 |
| Title |
Transcriptome changes associated with M9T337 root defense response after 6S-2 colonization and MR5 infection |
| Organism |
Malus domestica |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
To study the transcriptional level of M9T337 roots induced by T. asperellum 6S-2, and the mechanism of defense against MR5.
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| Overall design |
We then performed gene expression profilling analysis using data obtained from RNA-seq of 4 different treatments (CK, Ta, Fp,TaFp) at three repetitions
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| Contributor(s) |
Wang H, Mao Z |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
May 03, 2022 |
| Last update date |
May 06, 2022 |
| Contact name |
Haiyan Wang |
| E-mail(s) |
[email protected]
|
| Phone |
+8618706387318
|
| Organization name |
Shandong Agricultural University
|
| Street address |
61 Daizong Street
|
| City |
Taiļ¼an |
| State/province |
Shandong |
| ZIP/Postal code |
271018 |
| Country |
China |
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| Platforms (1) |
| GPL29987 |
Illumina NovaSeq 6000 (Malus domestica) |
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| Samples (12)
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| GSM6094326 |
CK_1 apple rootstock (M9T337) root inoculated with PDB medium (CK1) |
| GSM6094327 |
CK_2 apple rootstock (M9T337) root inoculated with PDB medium (CK2) |
| GSM6094328 |
CK_3 apple rootstock (M9T337) root inoculated with PDB medium (CK3) |
| GSM6094329 |
T6S_2_1 apple rootstock (M9T337) root with 6S-2 spore suspension inoculum only (Ta1) |
| GSM6094330 |
T6S_2_2 apple rootstock (M9T337) root with 6S-2 spore suspension inoculum only (Ta2) |
| GSM6094331 |
T6S_2_3 apple rootstock (M9T337) root with 6S-2 spore suspension inoculum only (Ta3) |
| GSM6094332 |
CK_C_1 apple rootstock (M9T337) root inoculated with PDB medium first and then inoculated with MR5 (Fp1) |
| GSM6094333 |
CK_C_2 apple rootstock (M9T337) root inoculated with PDB medium first and then inoculated with MR5 (Fp2) |
| GSM6094334 |
CK_C_3 apple rootstock (M9T337) root inoculated with PDB medium first and then inoculated with MR5 (Fp3) |
| GSM6094335 |
T6S_2_C_1 apple rootstock (M9T337) root with 6S-2 spore suspension inoculum first and then inoculated with MR5 (TaFp1) |
| GSM6094336 |
T6S_2_C_2 apple rootstock (M9T337) root with 6S-2 spore suspension inoculum first and then inoculated with MR5 (TaFp2) |
| GSM6094337 |
T6S_2_C_3 apple rootstock (M9T337) root with 6S-2 spore suspension inoculum first and then inoculated with MR5 (TaFp3) |
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| Relations |
| BioProject |
PRJNA834642 |
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