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Series GSE19651 Query DataSets for GSE19651
Status Public on Jan 13, 2010
Title Discovery of common Asian copy number variants using high-resolution array CGH
Organism Homo sapiens
Experiment type Genome variation profiling by genome tiling array
Summary Discovery of common Asian copy number variants using a novel integrated high-resolution array CGH and massively parallel DNA sequencing.

We attempted to discover common Asian copy number variants (CNVs) from the DNA of 30 Asian women (10 Korean, 10 CHB (HapMap), 10 JPT (HapMap)) using a custom-designed 24M-oligonucleotide Agilent platform (1.1M X 24 slides). The reference sample for aCGH was NA10851 (HapMap CEPH). In addition to the 30 women, 3 more individuals were analyzed as controls (AK1 (Kim, J.I. et al., 2009 Nature), NA12878 and NA19240).
 
Overall design 33 test samples (30 Asian women, AK1, NA12878 and NA19240 (Cy5)); NA10851 as the reference sample (Cy3); and custom-designed 24M-probes Agilent Arrays were utilized.
 
Contributor(s) Seo J, Lee C
Citation(s) 20364138
Submission date Dec 24, 2009
Last update date Mar 21, 2012
Contact name Dongwan Hong
E-mail(s) [email protected]
Phone +82-2-740-8424
Fax +82-2-741-5423
URL http://www.gmi.ac.kr
Organization name Genomic Medicine Institute, Seoul National University College of Medicine
Department Biochemistry and Molecular Biology
Street address 28 Yeongeon-dong, Jongno-gu
City Seoul
ZIP/Postal code 110-799
Country South Korea
 
Platforms (24)
GPL9857 Agilent/SNU human 24M CGH array, 1 of 24 (Feature Number version)
GPL9859 Agilent/SNU human 24M CGH array, 2 of 24 (Feature Number version)
GPL9874 Agilent/SNU human 24M CGH array, 3 of 24 (Feature Number version)
Samples (792)
GSM494899 Korean Male, AK1, slide 1
GSM494900 Korean Female, AK2, slide 1
GSM494901 Korean Female, AK4, slide 1
Relations
BioProject PRJNA122547

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE19651_RAW.tar 76.6 Gb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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