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Series GSE186686 Query DataSets for GSE186686
Status Public on Jan 25, 2023
Title Histone variant H3.3 facilitates open chromatin at promoters [GRO-seq]
Organism Mus musculus
Experiment type Other
Summary We analyze the contribution of H3.3 to chromatin accessibility, post-translational modification states, and transcription in mouse embryonic stem cells (mESC).
 
Overall design GRO-seq analysis in mouse embryonic stem cell lines (Control, H33KO).
 
Contributor(s) Martire S, Banaszynski LA
Citation(s) 36782260
Submission date Oct 27, 2021
Last update date Apr 26, 2023
Contact name Laura Banaszynski
E-mail(s) [email protected]
Organization name UT Southwestern Medical Center
Department Green Center for Reproductive Biology Sciences
Street address 5323 Harry Hines Blvd
City Dallas
State/province TX
ZIP/Postal code 75390-8511
Country USA
 
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (4)
GSM5658970 ESC_H33WT_GRO-Seq_rep1
GSM5658971 ESC_H33WT_GRO-Seq_rep2
GSM5658972 ESC_H33KO_GRO-Seq_rep1
This SubSeries is part of SuperSeries:
GSE186687 Histone variant H3.3 facilitates open chromatin at promoters.
Relations
BioProject PRJNA775070
SRA SRP343433

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE186686_RAW.tar 366.4 Mb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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