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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jul 19, 2022 |
| Title |
DAXX-ATRX-H3.3 Regulation of p53 Chromatin Binding and DNA Damage Response |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Web link |
https://pubmed.ncbi.nlm.nih.gov/36028493/
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| Citation(s) |
36028493 |
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| Submission date |
Oct 22, 2021 |
| Last update date |
Oct 18, 2022 |
| Contact name |
Priyankara J Wickramasinghe |
| E-mail(s) |
[email protected]
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| Phone |
2154956837
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| Organization name |
The Wistar Institute
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| Department |
Bioinformatics
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| Lab |
Genomics
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| Street address |
3601 Spruce Street
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| City |
Philadelphia |
| State/province |
PA |
| ZIP/Postal code |
19104 |
| Country |
USA |
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| Platforms (1) |
| GPL18573 |
Illumina NextSeq 500 (Homo sapiens) |
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| Samples (42)
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| GSM5651628 |
DAXX WT cells, Etoposide treated, replicate 1 |
| GSM5651629 |
DAXX WT cells, Etoposide treated, replicate 2 |
| GSM5651630 |
DAXX WT cells, Etoposide treated, replicate 3 |
| GSM5651631 |
DAXX KO cells, untreated, replicate 1 |
| GSM5651632 |
DAXX KO cells, untreated, replicate 2 |
| GSM5651633 |
DAXX KO cells, untreated, replicate 3 |
| GSM5651634 |
DAXX KO cells, Etoposide treated, replicate 1 |
| GSM5651635 |
DAXX KO cells, Etoposide treated, replicate 2 |
| GSM5651636 |
DAXX KO cells, Etoposide treated, replicate 3 |
| GSM5651637 |
ATRX WT cells, untreated, replicate 1 |
| GSM5651638 |
ATRX WT cells, untreated, replicate 2 |
| GSM5651639 |
ATRX WT cells, untreated, replicate 3 |
| GSM5651640 |
ATRX WT cells, Etoposide treated, replicate 1 |
| GSM5651641 |
ATRX WT cells, Etoposide treated, replicate 2 |
| GSM5651642 |
ATRX WT cells, Etoposide treated, replicate 3 |
| GSM5651643 |
ATRX KO cells, untreated, replicate 1 |
| GSM5651644 |
ATRX KO cells, untreated, replicate 2 |
| GSM5651645 |
ATRX KO cells, untreated, replicate 3 |
| GSM5651646 |
ATRX KO cells, Etoposide treated, replicate 1 |
| GSM5651647 |
ATRX KO cells, Etoposide treated, replicate 2 |
| GSM5651648 |
ATRX KO cells, Etoposide treated, replicate 3 |
| GSM5651834 |
p53, DAXX WT cells |
| GSM5651835 |
p53, DAXX KO cells |
| GSM5651836 |
IgG, DAXX WT cells |
| GSM5651837 |
IgG, DAXX KO cells |
| GSM5651838 |
input, DAXX WT cells |
| GSM5651839 |
input, DAXX KO cells |
| GSM6268797 |
ATAC: DAXX/ATRX WT, untreated, replicate 1 |
| GSM6268798 |
ATAC: DAXX/ATRX WT, untreated, replicate 2 |
| GSM6268799 |
ATAC: DAXX/ATRX WT, Etoposide treated, replicate 1 |
| GSM6268800 |
ATAC: DAXX/ATRX WT, Etoposide treated, replicate 2 |
| GSM6268801 |
ATAC: DAXX KO, untreated, replicate 1 |
| GSM6268802 |
ATAC: DAXX KO, untreated, replicate 2 |
| GSM6268803 |
ATAC: DAXX KO, Etoposide treated, replicate 1 |
| GSM6268804 |
ATAC: DAXX KO, Etoposide treated, replicate 2 |
| GSM6268805 |
ATAC: ATRX KO, untreated, replicate 1 |
| GSM6268806 |
ATAC: ATRX KO, untreated, replicate 2 |
| GSM6268807 |
ATAC: ATRX KO, Etoposide treated, replicate 1 |
| GSM6268808 |
ATAC: ATRX KO, Etoposide treated, replicate 2 |
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| This SuperSeries is composed of the following SubSeries: |
| GSE186440 |
DAXX-ATRX-H3.3 Regulation of p53 Chromatin Binding and DNA Damage Response [RNA-Seq] |
| GSE186442 |
DAXX-ATRX-H3.3 Regulation of p53 Chromatin Binding and DNA Damage Response [ChIP-Seq] |
| GSE207046 |
DAXX-ATRX-H3.3 Regulation of p53 Chromatin Binding and DNA Damage Response [ATAC-Seq] |
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| Relations |
| BioProject |
PRJNA773790 |
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