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| Status |
Public on Oct 31, 2009 |
| Title |
Gene expression dissection of the circadian neuronal circuit of Drosophila identifies novel circadian genes |
| Organism |
Drosophila melanogaster |
| Experiment type |
Expression profiling by array
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| Summary |
Gene expression profiling of distinct members of a neuronal circuit has the potential to identify candidate molecules and mechanisms that underlie the formation, organization and function of the circuit. To this end, we report here the application of a novel method to characterize RNAs from small numbers of specific Drosophila brain neurons, which belong to the circadian circuit. We identified three different sets of mRNAs enriched in different subclasses of clock neurons: one is enriched in all clock neurons, a second is enriched in PDF-positive clock neurons and a third is enriched in PDF-negative clock neurons. Moreover, we characterized 2 novel genes, Fer2 and dnocturnin, one from each subgroup, which highlight subgroup-specific features and play important roles in circadian rhythms. The methodology is a powerful tool not only to dissect the cellular and molecular basis of circadian rhythms but also to molecularly characterize other Drosophila neuronal circuits.
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| Overall design |
Circadican related neuronal celltypes (Tim, Pdf) or general neurons (Elav) were labeled by GFP or YFP using specific Gal4 drivers. Expression of those celltypes were profiled after manual sorting of those GFP or YFP positive cells. 3 biological replicates were collected (except adult small pdf cells).
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| Contributor(s) |
Nagoshi E, Kula E, Sugino K |
| Citation(s) |
19966839 |
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| Submission date |
Aug 25, 2009 |
| Last update date |
Aug 28, 2018 |
| Contact name |
Ken Sugino |
| Organization name |
Janelia Research Campus
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| Lab |
NeuroSeq
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| Street address |
19700 Helix Dr
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| City |
Ashburn |
| State/province |
VA |
| ZIP/Postal code |
20147 |
| Country |
USA |
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| Platforms (1) |
| GPL1322 |
[Drosophila_2] Affymetrix Drosophila Genome 2.0 Array |
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| Samples (23)
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| GSM444314 |
Elav cells from larva, biological replicate 1 |
| GSM444315 |
Elav cells from larva, biological replicate 2 |
| GSM444316 |
Elav cells from larva, biological replicate 3 |
| GSM444317 |
Tim cells from larva, biological replicate 1 |
| GSM444318 |
Tim cells from larva, biological replicate 2 |
| GSM444319 |
Tim cells from larva, biological replicate 3 |
| GSM444320 |
Pdf cells from larva, biological replicate 1 |
| GSM444321 |
Pdf cells from larva, biological replicate 2 |
| GSM444322 |
Pdf cells from larva, biological replicate 3 |
| GSM444323 |
Tim-Gal4-Pdf-Gad80 cells from larva, biological replicate 1 |
| GSM444324 |
Tim-Gal4-Pdf-Gad80 cells from larva, biological replicate 2 |
| GSM444325 |
Tim-Gal4-Pdf-Gad80 cells from larva, biological replicate 3 |
| GSM444326 |
Eyes from adult, biological replicate 1 |
| GSM444327 |
Eyes from adult, biological replicate 2 |
| GSM444328 |
Eyes from adult, biological replicate 3 |
| GSM444329 |
Large Pdf cells from adult biological replicate 1 |
| GSM444330 |
Large Pdf cells from adult biological replicate 2 |
| GSM444331 |
Large Pdf cells from adult biological replicate 3 |
| GSM444332 |
Small Pdf cells from adult biological replicate 1 |
| GSM444333 |
Small Pdf cells from adult biological replicate 2 |
| GSM444334 |
Elav cells from adult biological replicate 1 |
| GSM444335 |
Elav cells from adult biological replicate 2 |
| GSM444336 |
Elav cells from adult biological replicate 3 |
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| Relations |
| BioProject |
PRJNA118339 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE17803_RAW.tar |
41.7 Mb |
(http)(custom) |
TAR (of CEL) |
| Processed data included within Sample table |
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