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Series GSE175987 Query DataSets for GSE175987
Status Public on Apr 07, 2022
Title RNA-sequencing analysis of the OsbZIP83 overexpression rice lines.
Organism Oryza sativa
Experiment type Expression profiling by high throughput sequencing
Summary We report the comparison of transcript expression in OsbZIP83 overexpression lines b83OX-13, 15 and 19 against non-transformants (NT) in Fe-sufficient roots and leaves by RNA-Seq.
 
Overall design Total RNA was extracted from Fe-sufficient roots and leaves of b83OX-13, 15, 19 and NT, and used for RNA-Seq library preparation, sequencing, mapping and quantification of each gene expression as read per million (RPM).
 
Contributor(s) Kobayashi T, Nagano AJ
Citation(s) 35411594
Submission date Jun 02, 2021
Last update date Jul 12, 2022
Contact name Takanori Kobayashi
E-mail(s) [email protected]
Phone +81 76 227 7505
Organization name Ishikawa Prefectural University
Department Research Institute for Bioresources and Biotechnology
Street address 1-308 Suematsu
City Nonoichi
State/province Ishikawa
ZIP/Postal code 921-8836
Country Japan
 
Platforms (1)
GPL24468 HiSeq X Ten (Oryza sativa)
Samples (8)
GSM5352358 NT +Fe Root (control)
GSM5352359 b83OX-13 +Fe Root
GSM5352360 b83OX-15 +Fe Root
Relations
BioProject PRJNA734505
SRA SRP322327

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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE175987_210601-b83OX-RNAseq.xlsx 26.4 Mb (ftp)(http) XLSX
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Raw data are available in SRA
Processed data are available on Series record

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