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Series GSE172107 Query DataSets for GSE172107
Status Public on Jan 01, 2022
Title Intergenerational metabolic priming by sperm piRNAs
Organism Drosophila melanogaster
Experiment type Expression profiling by high throughput sequencing
Non-coding RNA profiling by high throughput sequencing
Summary Preconception parental environment can reproducibly program offspring phenotype without altering the DNA sequence, yet the mechanisms underpinning this ‘epigenetic inheritance’ remains elusive. Here, we demonstrate the existence of an intact piRNA-pathway in mature Drosophila sperm and show that pathway modulation alters offspring gene transcription in a sequence-specific manner. We map a dynamic small RNA content in developing sperm and find that the mature sperm carry a highly distinct small RNA cargo. By biochemical pulldown, we identify a small RNA subset bound directly to piwi protein. And, we show that piRNA-pathway controlled sperm small RNAs are linked to target gene repression in offspring. Critically, we find that full piRNA-pathway dosage is necessary for the intergenerational metabolic and transcriptional reprogramming events triggered by high paternal dietary sugar. These data provide a direct link between regulation of endogenous mature sperm small RNAs and transcriptional programming of complementary sequences in offspring. Thus, we identify a novel mediator of paternal intergenerational epigenetic inheritance.
 
Overall design Drosophila melanogaster small RNA and mRNA samples with differing library preparations, tissue, and genotypes.
 
Contributor(s) Beddows I, Lempradl H
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Submission date Apr 14, 2021
Last update date Jan 01, 2022
Contact name Ian Beddows
E-mail(s) [email protected]
Organization name Van Andel Institute
Street address 333 Bostwick Ave NE
City Grand Rapids
State/province MI
ZIP/Postal code 49503
Country USA
 
Platforms (1)
GPL19132 Illumina NextSeq 500 (Drosophila melanogaster)
Samples (34)
GSM5241879 SV_PIWI_IP_1
GSM5241880 SV_PIWI_IP_2
GSM5241881 SV_PIWI_IP_3
Relations
BioProject PRJNA722018
SRA SRP314867

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Supplementary file Size Download File type/resource
GSE172107_counts_mRNA.tsv.gz 349.0 Kb (ftp)(http) TSV
GSE172107_sRNA_assigned_counts_antisense.tsv.gz 375.3 Kb (ftp)(http) TSV
GSE172107_sRNA_assigned_counts_sense.tsv.gz 832.1 Kb (ftp)(http) TSV
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Raw data are available in SRA
Processed data are available on Series record

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