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| Status |
Public on Mar 09, 2021 |
| Title |
MicroRNA signatures of the developing primate fovea |
| Organism |
Macaca mulatta |
| Experiment type |
Expression profiling by high throughput sequencing
Non-coding RNA profiling by high throughput sequencing
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| Summary |
Purpose: Uncover the mRNA and microRNA signatures of non-human primate retina during development.
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| Overall design |
1) Comparison of mRNA profiles from nasal versus temporal rhesus macaque retinal punches at embryonic days (E)50 (n=3), E90 (n=1, pair-end sequencing), andE 150 (n=1, pair-end sequencing), using Illumina NextSeq 500 system (Illumina, San Diego, CA). 2) Comparison of microRNA (miRNA) profiles from nasal versus temporal rhesus macaque retinal punches at embryonic day 50 (n=3), using Illumina NextSeq 500 system (Illumina, San Diego, CA).
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| Contributor(s) |
Fishman ES, Louie M, Miltner AM, Cheema SK, Wong J, Schlaeger NM, Moshiri A, Simó S, Tarantal AF, La Torre A |
| Citation(s) |
33898453 |
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| Submission date |
Mar 08, 2021 |
| Last update date |
Apr 28, 2021 |
| Contact name |
Sergi Simo |
| E-mail(s) |
[email protected]
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| Phone |
+15307529056
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| Organization name |
University of California Davis
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| Department |
Cell Biology and Human Anatomy
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| Lab |
Simo lab
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| Street address |
One Shields Avenue, 3402 Tupper Hall
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| City |
Davis |
| State/province |
CA |
| ZIP/Postal code |
95616 |
| Country |
USA |
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| Platforms (1) |
| GPL21120 |
Illumina NextSeq 500 (Macaca mulatta) |
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| Samples (16)
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| Relations |
| BioProject |
PRJNA707516 |
| SRA |
SRP309763 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE168475_mRNAseq_Retina_E-50-90-150_Temporal_vs_Nasal_CPM.xlsx |
2.1 Mb |
(ftp)(http) |
XLSX |
| GSE168475_miRNAseq_Retina_E50_Nasal_vs_Temporal_TPM.xlsx |
48.4 Kb |
(ftp)(http) |
XLSX |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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