NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE168407 Query DataSets for GSE168407
Status Public on May 20, 2021
Title A follicular regulatory innate lymphoid cell population impairs interactions between germinal center Tfh and B cells
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Here we show a newly identified human Innate Lymphoid Cell population present in the follicles of tonsils and lymph nodes termed follicular regulatory ILCs (ILCFR). ILCFR have a distinct phenotype and transcriptional program when compared to other defined ILCs. Surprisingly, ILCFR inhibit the ability of follicular helper T (Tfh) cells to provide B cell help. The localization of ILCFR to the germinal centers suggests these cells may interfere with germinal center B cell (GC-B) and germinal center Tfh cell (GC-Tfh) interactions through the production of transforming growth factor beta (TGF-b). Intriguingly, under conditions of impaired GC-Tfh-GC-B cell interactions, such as human immunodeficiency virus (HIV) infection, the frequency of these cells is increased. Overall, we predict a role for ILCFR in regulating GC-Tfh-GC-B cell interactions and propose they expand in chronic inflammatory conditions.
 
Overall design 7 individual human tonsil samples of 7 different cell poulations were collected for each tonsil
 
Contributor(s) O'Connor MH, Muir R, Chakhtoura M, Fang M, Moysi E, Moir S, Carey AJ, Terk A, Nichols CN, Metcalf T, Petrovas C, Cameron MJ, Tardif V, Haddad EK
Citation(s) 33980982
Submission date Mar 07, 2021
Last update date May 20, 2021
Contact name Mark Cameron
E-mail(s) [email protected]
Organization name Case Western Reserve University
Department Population and Quantitative Health Sciences
Lab Cameron
Street address 10900 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44106
Country USA
 
Platforms (1)
GPL21697 NextSeq 550 (Homo sapiens)
Samples (49)
GSM5138454 Donor: TSL56 Cell Line: GCB
GSM5138455 Donor: TSL56 Cell Line: GCTFH
GSM5138456 Donor: TSL56 Cell Line: Treg
Relations
BioProject PRJNA707309
SRA SRP309630

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE168407_rawcounts.csv.gz 1.4 Mb (ftp)(http) CSV
GSE168407_tmm_voom.csv.gz 4.4 Mb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap