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| Status |
Public on Mar 23, 2021 |
| Title |
RNA sequencing of Arabidopsis mature seed and germination stages |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
We analysed transcriptome changes in Arabidopsis Col-0 and ros1-4 mutant seeds (3 stages corresponding mature (mat), germination II (II) and germination IV (IV)
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| Overall design |
Three replicates of at least 100 seeds at three developemental stages with same growing conditions
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| Contributor(s) |
Verdier J, Malabarba J |
| Citation(s) |
33807066 |
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| Submission date |
Feb 22, 2021 |
| Last update date |
Jun 22, 2021 |
| Contact name |
Jerome Verdier |
| E-mail(s) |
[email protected]
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| Organization name |
INRAE / IRHS
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| Lab |
SEED
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| Street address |
Rue Georges Morel
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| City |
Angers |
| ZIP/Postal code |
49000 |
| Country |
France |
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| Platforms (1) |
| GPL24025 |
BGISEQ-500 (Arabidopsis thaliana) |
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| Samples (18)
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| GSM5100249 |
RNAs from seed produced at 23°C_mature stage, Col_1 |
| GSM5100250 |
RNAs from seed produced at 23°C_mature stage, Col_2 |
| GSM5100251 |
RNAs from seed produced at 23°C_mature stage, Col_3 |
| GSM5100252 |
RNAs from seed produced at 23°C_germination II stage, Col_1 |
| GSM5100253 |
RNAs from seed produced at 23°C_germination II stage, Col_2 |
| GSM5100254 |
RNAs from seed produced at 23°C_germination II stage, Col_3 |
| GSM5100255 |
RNAs from seed produced at 23°C_germination IV stage, Col_1 |
| GSM5100256 |
RNAs from seed produced at 23°C_germination IV stage, Col_2 |
| GSM5100257 |
RNAs from seed produced at 23°C_germination IV stage, Col_3 |
| GSM5100258 |
RNAs from seed produced at 23°C_mature stage, ros_1 |
| GSM5100259 |
RNAs from seed produced at 23°C_mature stage, ros_2 |
| GSM5100260 |
RNAs from seed produced at 23°C_mature stage, ros_3 |
| GSM5100261 |
RNAs from seed produced at 23°C_germination II stage, ros_1 |
| GSM5100262 |
RNAs from seed produced at 23°C_germination II stage, ros_2 |
| GSM5100263 |
RNAs from seed produced at 23°C_germination II stage, ros_3 |
| GSM5100264 |
RNAs from seed produced at 23°C_germination IV stage, ros_1 |
| GSM5100265 |
RNAs from seed produced at 23°C_germination IV stage, ros_2 |
| GSM5100266 |
RNAs from seed produced at 23°C_germination IV stage, ros_3 |
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| This SubSeries is part of SuperSeries: |
| GSE167245 |
Regulation of DNA (de)methylation positively impacts seed germination during seed development under heat stress |
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| Relations |
| BioProject |
PRJNA703985 |
| SRA |
SRP307538 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE167244_count.csv.gz |
2.0 Mb |
(ftp)(http) |
CSV |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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