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| Status |
Public on Mar 23, 2021 |
| Title |
Bisulfite sequencing (WGBS) of Arabidopsis seed developmental stages at different degrees of heat stress |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Methylation profiling by high throughput sequencing
|
| Summary |
We analyzed methylome changes in Arabidopsis between seed development (2 stages corresponding to Bent (B) and mature (MS) embryo stages) at three growing conditions (23, 25 and 27°C)
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| |
|
| Overall design |
Two replicates of at least 500 seeds at two developemental stages and different growing conditions
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| |
|
| Contributor(s) |
Verdier J, Malabarba J |
| Citation(s) |
33807066 |
| |
| Submission date |
Feb 22, 2021 |
| Last update date |
Jun 22, 2021 |
| Contact name |
Jerome Verdier |
| E-mail(s) |
[email protected]
|
| Organization name |
INRAE / IRHS
|
| Lab |
SEED
|
| Street address |
Rue Georges Morel
|
| City |
Angers |
| ZIP/Postal code |
49000 |
| Country |
France |
| |
|
| Platforms (1) |
| GPL17639 |
Illumina HiSeq 2500 (Arabidopsis thaliana) |
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| Samples (12)
|
| GSM5100237 |
DNA from seed produced at 23°C_Bent stage, T24_B1 |
| GSM5100238 |
DNA from seed produced at 23°C_Bent stage, T24_B2 |
| GSM5100239 |
DNA from seed produced at 23°C_Mature stage, T24_M1 |
| GSM5100240 |
DNA from seed produced at 23°C_Mature stage, T24_M2 |
| GSM5100241 |
DNA from seed produced at 25°C_Bent stage, T26_B1 |
| GSM5100242 |
DNA from seed produced at 25°C_Bent stage, T26_B2 |
| GSM5100243 |
DNA from seed produced at 25°C_Mature stage, T26_M1 |
| GSM5100244 |
DNA from seed produced at 25°C_Mature stage, T26_M2 |
| GSM5100245 |
DNA from seed produced at 27°C_Bent stage, T28_B1 |
| GSM5100246 |
DNA from seed produced at 27°C_Bent stage, T28_B2 |
| GSM5100247 |
DNA from seed produced at 27°C_Mature stage, T28_M1 |
| GSM5100248 |
DNA from seed produced at 27°C_Mature stage, T28_M2 |
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| This SubSeries is part of SuperSeries: |
| GSE167245 |
Regulation of DNA (de)methylation positively impacts seed germination during seed development under heat stress |
|
| Relations |
| BioProject |
PRJNA703984 |
| SRA |
SRP307537 |
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