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| Status |
Public on Jul 11, 2021 |
| Title |
Tcf1/Lef1 transcription factors and CD8 T cell identity [Hi-C] |
| Organism |
Mus musculus |
| Experiment type |
Other
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| Summary |
Comparison of global genome organization between WT and Tcf1/Lef1-deficient naïve CD8+ T cells
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| Overall design |
Splenocytes were harvested from hCD2-Cre, Rosa26-lsl-GFP, Tcf1/Lef1 wild-type or double floxed mice, and sorted for GFP+TCRbeta+ naïve CD8+ T cells, followed by crosslinking, enzyme digestion, proximity ligation, and then HiC sequencing.
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| Contributor(s) |
Xue H, Peng W, Li X |
| Citation(s) |
34615872, 35882936 |
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| Submission date |
Jan 12, 2021 |
| Last update date |
Apr 03, 2023 |
| Contact name |
Weiqun Peng |
| E-mail(s) |
[email protected]
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| Organization name |
The George Washington University
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| Street address |
1918 F Street, NW , DC
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| City |
Washington |
| State/province |
DC |
| ZIP/Postal code |
20052 |
| Country |
USA |
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| Platforms (1) |
| GPL21103 |
Illumina HiSeq 4000 (Mus musculus) |
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| Samples (4)
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| GSM5017664 |
Tcf1/Lef1-deficient naive CD8+, HiC, rep2 |
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| This SubSeries is part of SuperSeries: |
| GSE164713 |
Tcf1/Lef1 transcription factors and CD8 T cell identity |
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| Relations |
| BioProject |
PRJNA691614 |
| SRA |
SRP301470 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE164710_RAW.tar |
3.2 Gb |
(http)(custom) |
TAR (of HIC) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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