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| Status |
Public on Jan 06, 2021 |
| Title |
Comparison of mitochondrial tRNA abundance profiling in wild type and mutant mitochondrial RNA polymerase overexpression flies. |
| Organism |
Drosophila melanogaster |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
To investigate differential mitochondrial tRNA gene expression in wild type (WT) and mutant (E423P) mitochondrial RNA polymerase (POLRMT) overexpression flies, we performed Drsophila mitochondrial tRNA-seq according to the Hydro-tRNAseq method. tRNA-seq reads were subjected to 3' - adapter filtering , 3' - adapter trimming and quality control. The tRNAs expression levels were measured by tag count. For each tRNA sequence-based profile, the mapped reads number used to estimate the expression level of each tRNA. The tRNAs expression profiling was calculated based on uniquely mapped reads and including mapped reads, respectively. We found no difference in the relative abundance of mitochondrial individual tRNAs between WT and E423P overexpression flies.
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| Overall design |
Examination of mitochondrial tRNA expression profile in two overexpression files.
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| Contributor(s) |
Liu Y, Pirooznia M, Xu H |
| Citation missing |
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| |
| Submission date |
Jan 05, 2021 |
| Last update date |
Jan 07, 2021 |
| Contact name |
Mehdi Pirooznia |
| E-mail(s) |
[email protected]
|
| Phone |
410-340-6052
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| Organization name |
National Institutes of Health
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| Street address |
12 SOUTH DR
|
| City |
Bethesda |
| State/province |
MD |
| ZIP/Postal code |
20892 |
| Country |
USA |
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| Platforms (1) |
| GPL19132 |
Illumina NextSeq 500 (Drosophila melanogaster) |
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| Samples (6)
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| Relations |
| BioProject |
PRJNA689877 |
| SRA |
SRP300565 |
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