NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE164227 Query DataSets for GSE164227
Status Public on Mar 01, 2021
Title Small RNAseq of MV3 melanoma cells overexpressing MCPIP1 protein
Organism Homo sapiens
Experiment type Non-coding RNA profiling by high throughput sequencing
Summary Sequencing of small RNAs in RNA samples from control cells, cells overexpressing wild-type and mutated form of MCPIP1 ribonuclease
 
Overall design 4 biological replicates of each sample (transfected with epty vector, overexpressing wild-type MCPIP1 and overexpressing point mutant,D141N, of MCPIP1 protein) were sequenced on an Ion Torrent TM Proton machine for assessment of miRNA profile differences
 
Contributor(s) Nowak I
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Jan 04, 2021
Last update date Mar 01, 2021
Contact name Iwona Nowak
E-mail(s) [email protected]
Phone 694094603
Organization name Jagiellonian University
Street address Kalwaryjska 92/5
City Kraków
ZIP/Postal code 30-504
Country Poland
 
Platforms (1)
GPL17303 Ion Torrent Proton (Homo sapiens)
Samples (12)
GSM5004270 MV31_C.IonXpressRNA_001
GSM5004271 MV32_C.IonXpressRNA_004
GSM5004272 MV33_C.IonXpressRNA_007
Relations
BioProject PRJNA689586
SRA SRP300242

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE164227_DE_miRNA_wt_c.xlsx 80.5 Kb (ftp)(http) XLSX
GSE164227_DE_miRNA_wt_c_d141n.xlsx 81.5 Kb (ftp)(http) XLSX
GSE164227_DE_miRNA_wt_d141n.xlsx 74.3 Kb (ftp)(http) XLSX
GSE164227_MV_miRNA.bcmatrix.xlsx 189.5 Kb (ftp)(http) XLSX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap