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Series GSE163227 Query DataSets for GSE163227
Status Public on Jan 19, 2022
Title Potent, p53-independent induction of NOXA sensitizes MLL-rearranged B-cell acute lymphoblastic leukemia cells to venetoclax [RNA-Seq]
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary The prognosis for B cell precursor acute lymphoblastic leukemia patients with Mixed-Lineage Leukemia (MLL) gene rearrangements (MLLr BCP-ALL) is still extremely poor. Inhibition of anti-apoptotic protein BCL-2 with venetoclax emerged as a promising strategy for this subtype of BCP-ALL, however lack of sufficient responses in pre-clinical models and possibility of developing resistance exclude using venetoclax as monotherapy. Herein, we aimed to uncover potential mechanisms responsible for limited venetoclax activity in MLLr BCP-ALL and to identify drugs that could be used in combination therapy. Using RNA-seq, we observed that long-term exposure to venetoclax in vivo in patient derived xenograft model leads to downregulation of particular p53-related genes. Interestingly, addition of auranofin, a thioredoxin system inhibitor, sensitized MLLr BCP-ALL to venetoclax in various in vitro and in vivo models, independently on the p53 pathway functionality. Synergistic activity of these drugs resulted from auranofin-mediated upregulation of NOXA pro-apoptotic protein and potent induction of apoptotic cell death. More specifically, we observed that auranofin orchestrates upregulation of NOXA-encoding gene (PMAIP1) by chromatin remodeling and increased transcriptional accessibility. Altogether, these results present novel, promising drug combination that could be exploited for the treatment of MLLr BCP-ALL patients, including those with TP53 mutations.
 
Overall design RNA-seq in MLL-AF4+ patient derived xenograft ALL cells isolated from control (n=3) and venetoclax-treated (n=3) NSG mice
 
Contributor(s) Fidyt K, Harman JR, Madzio J, Pastorczak A, Milne TA, Firczuk M
Citation(s) 35091682
Submission date Dec 15, 2020
Last update date Jan 31, 2022
Contact name Malgorzata Firczuk
E-mail(s) [email protected]
Organization name Medical University of Warsaw
Department Department of Immunology
Street address Nielubowicza 5 Street
City Warsaw
State/province masovian
ZIP/Postal code 02-097
Country Poland
 
Platforms (1)
GPL21697 NextSeq 550 (Homo sapiens)
Samples (6)
GSM4975373 RNA-seq in MLL-AF4 patient derived xenograft cells - control_1
GSM4975374 RNA-seq in MLL-AF4 patient derived xenograft cells - control_2
GSM4975375 RNA-seq in MLL-AF4 patient derived xenograft cells - control_3
This SubSeries is part of SuperSeries:
GSE163229 Potent, p53-independent induction of NOXA sensitizes MLL-rearranged B-cell acute lymphoblastic leukemia cells to venetoclax
Relations
BioProject PRJNA685404
SRA SRP297999

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Supplementary file Size Download File type/resource
GSE163227_PDX1_CON_VEN_feature_counts.txt.gz 2.6 Mb (ftp)(http) TXT
GSE163227_contrast_PDX1_CON_vs_VEN_cpm.txt.gz 801.7 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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