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| Status |
Public on Jun 12, 2009 |
| Title |
Transcriptome comparison of Col-0, se-1, ago1-27 and se-1 35S::MIR156 in Arabidopsis thaliana. |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by array
|
| Summary |
Microarray analysis of wild type plants and plants with reduced (ago1-27 and se-1) or increased miR156 levels (se-1 p35S:MIR156). Shoot apices were dissected from 20-day-old, short-day grown plants.
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| Overall design |
Plants are grown in short day for 20 days. Total RNAs from shoot apex are extracted by RNeasy Plant Mini kit (Qiagen). The probes are labeled with MessageAmp-Biotin Enhanced, single round aRNA amplification kit from Ambion and hybridized to Affy ATH1 array. Each genotype has two replicates.
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| Contributor(s) |
Weigel D, Wang J |
| Citation(s) |
19703399 |
| |
| Submission date |
May 12, 2009 |
| Last update date |
Aug 28, 2018 |
| Contact name |
Jiawei Wang |
| E-mail(s) |
[email protected]
|
| Organization name |
Max Planck Institute for Developmental Biology
|
| Street address |
Spemannstr 37-39
|
| City |
Tuebingen |
| ZIP/Postal code |
D-72076 |
| Country |
Germany |
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| Platforms (1) |
| GPL198 |
[ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array |
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| Samples (8)
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| GSM402170 |
Arabidopsis thaliana_apex_SD_20-day_Col-0_replicate 1 |
| GSM402171 |
Arabidopsis thaliana_apex_SD_20-day_Col-0_replicate 2 |
| GSM402172 |
Arabidopsis thaliana_apex_SD_20-day_ago1-27_replicate 1 |
| GSM402173 |
Arabidopsis thaliana_apex_SD_20-day_ago1-27_replicate 2 |
| GSM402174 |
Arabidopsis thaliana_apex_SD_20-day_se-1_replicate 1 |
| GSM402175 |
Arabidopsis thaliana_apex_SD_20-day_se-1_replicate 2 |
| GSM402176 |
Arabidopsis thaliana_apex_SD_20-day_se-1 p35S::MIR156_replicate 1 |
| GSM402177 |
Arabidopsis thaliana_apex_SD_20-day_se-1 p35S::MIR156_replicate 2 |
|
| Relations |
| BioProject |
PRJNA115479 |
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