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Series GSE159288 Query DataSets for GSE159288
Status Public on May 17, 2021
Title Xyloglucan processing by Xanthomonas plant pathogens and its role in the activation of virulence factors.
Organism Xanthomonas citri pv. citri
Experiment type Expression profiling by high throughput sequencing
Summary Xyloglucans are highly substituted polysaccharides found in the primary cell walls of all vascular plants, acting as a first barrier against pathogens. Herein, we revealed that the diverse and economically relevant Xanthomonas phytopathogens are endowed with an enzymatic system targeting xyloglucans. Furthermore, we demonstrate that the products generated by this system elicit the expression of multiple virulence factors including the type III secretion system, a membrane-embedded machinery to deliver effector proteins into the host cells. Together, these findings illuminate the intricate enzymatic apparatus employed by Xanthomonas to break down xyloglucans and connect this system to the pathogenesis through activating the expression of key virulence factors. 
 
Overall design mRNA profiles of X. citri grown on minimal media XVM2m containing xyloglucan-oligosaccharides relative to the media XVM2m containing glucose as a reference.
 
Contributor(s) Bonfim IM, Paixão DA, Persinoti GF, Giuseppe PO, Murakami MT
Citation(s) 34193873
Submission date Oct 09, 2020
Last update date Jun 08, 2023
Contact name Gabriela F Persinoti
E-mail(s) [email protected]
Phone 551935175165
Organization name Brazilian Center for Research in Energy and Materials CNPEM
Department Brazilian Biorenewables National Laboratory LNBR
Street address Rua Giuseppe Máximo Scalfaro, 10.000
City Campinas
State/province São Paulo
ZIP/Postal code 13083-970
Country Brazil
 
Platforms (1)
GPL29238 Illumina HiSeq 2500 (Xanthomonas citri pv. citri)
Samples (10)
GSM4825435 Glucose_rep_A1
GSM4825436 Glucose_rep_B1
GSM4825437 Glucose_rep_B0
Relations
BioProject PRJNA668298
SRA SRP286862

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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE159288_Raw_counts.xls.gz 74.1 Kb (ftp)(http) XLS
GSE159288_TPM_XyG.xls.gz 363.9 Kb (ftp)(http) XLS
GSE159288_XyG.vs.Glu.Deseq2_results.xls.gz 183.6 Kb (ftp)(http) XLS
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Raw data are available in SRA
Processed data are available on Series record

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