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Series GSE158430 Query DataSets for GSE158430
Status Public on Sep 24, 2020
Title Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility
Organisms Gallus gallus; Sus scrofa; Bos taurus
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
 
Citation(s) 33758196, 34615879
Submission date Sep 23, 2020
Last update date Oct 14, 2021
Contact name Colin Kern
Organization name UC San Diego
Street address 9500 Gilman Dr
City La Jolla
State/province CA
ZIP/Postal code 92093
Country USA
 
Platforms (9)
GPL19005 Illumina HiSeq 2500 (Gallus gallus)
GPL21659 Illumina HiSeq 3000 (Bos taurus)
GPL22475 Illumina HiSeq 4000 (Sus scrofa)
Samples (334)
GSM4799540 RNA-seq from UC Davis FAANG chicken adipose rep A
GSM4799541 RNA-seq from UC Davis FAANG chicken adipose rep B
GSM4799542 RNA-seq from UC Davis FAANG cattle adipose rep M08
This SuperSeries is composed of the following SubSeries:
GSE158412 Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility (RNA-Seq)
GSE158414 Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility (ATAC-Seq)
GSE158416 Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility (CTCF ChIP-Seq)
Relations
BioProject PRJNA665212

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE158430_RAW.tar 440.9 Mb (http)(custom) TAR (of BED, TXT)
SRA Run SelectorHelp
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