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Series GSE157581 Query DataSets for GSE157581
Status Public on Nov 08, 2021
Title TTP protects against acute liver failure by regulating CCL2 and CCL5 through m6A RNA methylation
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Tristetraprolin (TTP), an important immunosuppressive protein regulating mRNA decay through recognizing the AU-rich elements (AREs) within the 3’UTRs of mRNAs, participates in the pathogenesis of liver diseases. However, whether TTP regulates mRNA stability through other mechanisms remains poorly understood. Here, we report that TTP is upregulated in acute liver failure (ALF), resulting in decreased mRNA stabilities of C-C Motif Chemokine Ligand 2 (CCL2) and C-C Motif Chemokine Ligand 5 (CCL5) through promoting N6-methyladenosine (m6A) mRNA methylation. Overexpression of TTP can markedly ameliorate hepatic injury in vivo. TTP regulates the mRNA stabilization of CCL2 and CCL5. Interestingly, increased m6A methylation in CCL2 and CCL5 mRNAs promotes TTP-mediated RNA destabilization. Moreover, induction of TTP upregulates expression levels of WT1 associated protein (WTAP), Methyltransferase like 14 (METTL14), and YTH N6-methyladenosine RNA binding protein 2 (YTHDF2), which encode enzymes regulating m6A methylation, resulting in a global increase of m6A methylation and amelioration of live injury due to enhanced degradation of CCL2 and CCL5. These findings suggest a novel mechanism by which TTP modulates mRNA stabilities of CCL2 and CCL5 through m6A RNA methylation, which is involved in the pathogenesis of ALF.
 
Overall design RNA-Seq was performed in TTP stablely knockdown HL7702 cells.
Web link https://doi.org/10.1172/jci.insight.149276.
 
Contributor(s) Zhou R, Xiao P, Li M
Citation(s) 34877932
Submission date Sep 07, 2020
Last update date Feb 01, 2024
Contact name RUI Zhou
E-mail(s) [email protected]
Organization name Wuhan University
Street address Donghu Road 185
City Wuhan
ZIP/Postal code 430071
Country China
 
Platforms (1)
GPL21697 NextSeq 550 (Homo sapiens)
Samples (6)
GSM4770988 HL7702 shNC-1
GSM4770989 HL7702 shNC-2
GSM4770990 HL7702 shNC-3
Relations
BioProject PRJNA662043
SRA SRP280344

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE157581_counts.txt.gz 443.8 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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