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Series GSE154842 Query DataSets for GSE154842
Status Public on Oct 13, 2021
Title Tumor-reactive tissue resident memory T cells, regulatory T cells and prognosis in early luminal-like breast cancer
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Luminal-like breast cancer (BC) constitutes the majority of BC subtypes, but, differently from highly aggressive triple negative breast cancer (TNBC), is poorly infiltrated by the immune system. The quality of the immune infiltrate in luminal-like BCs has been poorly studied, thus a biological basis for the further investigation of immunotherapeutic strategies is missing. By using high-dimensional single-cell technologies, we identified heterogeneous behavior within the tissue-resident memory CD8+ T (Trm) cells infiltrating luminal-like tumors. We defined that a subset of CD127- CD39hi Trm cells is preferentially present in the tumor compared to the adjacent normal breast tissue or peripheral blood, displayed enhanced effector functions compared to the CD127+ CD39lo Trm counterpart, and was specifically associated with positive prognosis. Nevertheless, the prognostic benefit was lost in the presence of highly-suppressive CCR8hi ICOShi IRF4+ effector Tregs. Our results suggest that combinatorial strategies aiming at boosting Trm function while relieving from Treg-mediated immunosuppression are needed to achieve proper tumor control in luminal-like BCs.
 
Overall design RNA-Seq profiling of CD127+ CD39low and CD127- CD39high CD8+ Trm cells
 
Contributor(s) Losurdo A, Scirgolea C, Alvisi G, Mazza EM, Lugli E
Citation(s) 34552178
Submission date Jul 21, 2020
Last update date Oct 13, 2021
Contact name Emilia Maria Cristina Mazza
E-mail(s) [email protected]
Organization name Humanitas Clinical and Research Center
Street address Via Alessandro Manzoni, 56
City Rozzano, Milan
ZIP/Postal code 20089
Country Italy
 
Platforms (1)
GPL21697 NextSeq 550 (Homo sapiens)
Samples (8)
GSM4681461 Lib_1B_CD127p
GSM4681462 Lib_1D_CD127p
GSM4681463 Lib_1E_CD127p
Relations
BioProject PRJNA647774
SRA SRP273141

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE154842_matrix_rawcounts.xlsx 2.9 Mb (ftp)(http) XLSX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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