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Series GSE154346 Query DataSets for GSE154346
Status Public on Oct 16, 2021
Title Identification of pharmacologic inhibitors and activators of IL-4-induced macrophage polarization [THP-1 RNA-seq]
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Macrophages polarize towards different subpopulations with distinct and partly antagonistic functions in various diseases. IFNγ/LPS-polarized M1-type macrophages can have antiangiogenic activity, whereas IL-4-induced M2-type macrophages can be proangiogenic and profibrotic. Therapeutic strategies to inhibit M2-type polarization while promoting M1-type polarization could serve to inhibit pathological angiogenesis and fibrosis. Here, by combining global quantitative time-course proteomics and phosphoproteomics with a small-molecule inhibitor screen we identify signaling events that promote specifically IL-4-induced and not IFNγ/LPS-induced macrophage polarization and found that the MEK inhibitor trametinib and the HDAC inhibitor panobinostat potently prevent M2-type macrophage polarization without inhibiting M1-type polarization. In contrast, selective B-Raf inhibition promotes M2-type polarization. Trametinib and panobinostat also blocked M2-type macrophage polarization and concomitantly angiogenesis and fibrosis in models of wound healing and neovascular age-related macular degeneration in vivo. Thus, these pharmacologic inhibitors could be utilized therapeutically to selectively block IL4-induced macrophage polarization and reduce pathologic angiogenesis and fibrosis.
 
Overall design THP-1 cell M1-type and M2-type polarizations
 
Contributor(s) i He L, Marneros AG
Citation(s) 34731634
Submission date Jul 13, 2020
Last update date Dec 31, 2021
Contact name Alexander G Marneros
E-mail(s) [email protected]
Organization name Massachusetts General Hospital, Harvard Medical School
Department Department of Dermatology, Cutaneous Biology Research Center
Street address 13th Street
City Charlestown
State/province MA
ZIP/Postal code 02129
Country USA
 
Platforms (1)
GPL21697 NextSeq 550 (Homo sapiens)
Samples (18)
GSM4669292 RNA_THP1_DMSO_CTRL_1
GSM4669293 RNA_THP1_DMSO_CTRL_2
GSM4669294 RNA_THP1_DMSO_IFNLPS_1
This SubSeries is part of SuperSeries:
GSE154347 Identification of pharmacologic inhibitors and activators of IL-4-induced macrophage polarization in PBMC and THP-1 cells
Relations
BioProject PRJNA645926
SRA SRP271642

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE154346_RAW.tar 25.7 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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