NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE145048 Query DataSets for GSE145048
Status Public on Feb 02, 2022
Title GDF5+ chondroprogenitors derived from human pluripotent stem cells, which resemble embryonic teno/ligamento-genic cells, preferentially form permanent chondrocytes
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Background: Human pluripotent stem cells (hPSCs) give rise to chondrogenic activity in culture. Such activity was found in mesodermal and neural crest like progeny of hPSCs, and readily expanded as SOX9+ msenchymal cells in a medium containing FGF2. However, once expanded, the type of chondrocytes they perfer to form is growth plate-ike transient chondrocytes that are destined to form bone. However, we have recently developed a method to generate GDF5+ mesenchymal cells from such SOX9+ cells which ehibit activity to preferentially form articular-like permanent chondrocytes. The aim of the present prospective follow-up study was to reveal the cell-type and developmental origin of the GDF5+ cells as well as the SOX9+ cells.
Methods: Paraxial mesoderm was generated from human PSCs, purified by FACS, and expanded to generate SOX9+ chondroprogenitors. Then, the SOX9+ cells were further differentiated into joint progenitor-like GDF5+ chondroprogenitors. These two chondroprogenitors were subjcted to bulk RNA-seq.
Results: Based on the transcriptomic data, we examined differentially expressed genes, cell-type deconvolution analysis, and cell-type correlation analysis. The results suggested that GDF5+ cells might contain a teno/ligamento-genic potential (e.g., SCX+ cells), while SOX9+ cells were related to (neural crest-derived) ectomesenchymal chondroprogenitors. The followup biological analyses indicated as follows. The fast-growing SOX9+ cells formed cartilage that expressed chondrocyte hypertrophy markers and was readily mineralized after ectopic transplantation. In contrast, the slowly-growing GDF5+ cells were derived from SOX9+ cells. They formed cartilage that tended to express low to no chondrocyte hypertrophy markers, while expressing PRG4, a marker of embryonic articular chondrocytes, and to remain largely unmineralized in vivo.
Conclusions: Our results imply that GDF5+ cells specified to generate permanent-like cartilage are likely to emerge in association with the commitment of SOX9+ cells to the tendon/ligament lineage.
 
Overall design Bulk RNA-seq data of 4 SOX9+ chondogenic cells and 4 GDF5+ chondrogenic cells generated independently from human pluripotent stem cells were generated by deep sequencing.
 
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Feb 10, 2020
Last update date Feb 02, 2022
Contact name Guangsheng Pei
E-mail(s) [email protected]
Phone 7135697578
Organization name UTHealth
Street address 7000 Fanin
City Houston
State/province Texas
ZIP/Postal code 77030
Country USA
 
Platforms (1)
GPL21697 NextSeq 550 (Homo sapiens)
Samples (8)
GSM4305161 FSbC-1: SOX9+ cells
GSM4305162 FSbC-2: SOX9+ cells
GSM4305163 FSbC-3: SOX9+ cells
Relations
BioProject PRJNA605801
SRA SRP247990

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE145048_FPKM_Expression_Matrix.txt.gz 551.2 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap