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Series GSE143156 Query DataSets for GSE143156
Status Public on Jun 04, 2020
Title c-Rel gain in B cells dose-dependently drives germinal center reactions and autoantibody production in mice
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Single nucleotide polymorphisms and locus amplification link the NF-κB transcription factor c-Rel to human autoimmune diseases and B cell lymphomas, respectively. However, the functional consequences of enhanced c-Rel levels remain enigmatic. Here, we overexpress c- Rel specifically in mouse B cells from BAC-transgenic gene loci and demonstrate that c-Rel protein levels linearly dictate expansion of germinal center (GC) B cells and isotype-switched plasma cells. c-Rel expression in B cells of otherwise c-Rel-deficient mice fully rescues terminal B cell differentiation, underscoring its critical B cell-intrinsic roles. Unexpectedly, in GC B cells transcription-independent regulation produces the highest c-Rel protein levels amongst B cell subsets. In c-Rel overexpressing GC B cells this causes enhanced nuclear translocation, a profoundly altered transcriptional program and increased proliferation. Finally, we provide the first link between c-Rel gain and autoimmunity by showing that c-Rel overexpression in B cells causes autoantibody production and renal immune complex deposition.
 
Overall design For RNA sequencing experiments 8 mice per genotype were immunized i.p. with SRBC. Desired splenocyte populations were pre-separated by MACS followed by flow-cytometry- based cell sort of 1000 cells per sample into 96-well-plates containing TCL buffer (Qiagen) (naïve B cells: pre-MACS IgD+CD43+, sort IgDhiIgMlo; GC B cells: pre-MACS IgD-CD43-, sort B220+IgD-CD38loCD95hiGL7+; PC: pre-MACS CD138+, sort B220loCD138+).
 
Contributor(s) Ziegenhain C, Enard W
Citation(s) 32191641
Submission date Jan 06, 2020
Last update date Jun 04, 2020
Contact name Christoph Ziegenhain
E-mail(s) [email protected]
Organization name Ludwig-Maximilians University Munich
Department Department Biology II
Lab Anthropology & Human genomics
Street address Großhaderner Str. 2
City Martinsried
State/province Bavaria
ZIP/Postal code 82152
Country Germany
 
Platforms (1)
GPL18480 Illumina HiSeq 1500 (Mus musculus)
Samples (48)
GSM4251084 Spl1_naiveBC_1A_plus
GSM4251085 Spl1_GCB_1A_minus
GSM4251086 Spl1_PC_1B_plus
Relations
BioProject PRJNA599120
SRA SRP239544

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE143156_UMItable.txt.gz 617.7 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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