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Series GSE140488 Query DataSets for GSE140488
Status Public on Nov 16, 2019
Title BCL9 provides multi-cellular communication properties in colorectal cancer by interacting with paraspeckle proteins
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Colorectal cancer (CRC) is the third most commonly diagnosed cancer, which despite recent advances in treatment, remains incurable due to molecular heterogeneity of tumor cells. The B-cell lymphoma 9 (BCL9) oncogene functions as a transcriptional co-activator of the Wnt/β-catenin pathway, which plays critical roles in CRC pathogenesis. Here we have identified a β-catenin-independent function of BCL9 in a poor-prognosis subtype of CRC tumors characterized by expression of stromal and neural associated genes. In response to spontaneous calcium transients or cellular stress, BCL9 is recruited adjacent to the interchromosomal regions, where it stabilizes the mRNA of calcium signaling and neural associated genes by interacting with paraspeckle proteins. BCL9 subsequently promotes tumor progression and remodeling of the tumor microenvironment (TME) by sustaining the calcium transients and neurotransmitter-dependent communication among CRC cells. These data provide additional insights into the role of BCL9 in tumor pathogenesis and point towards additional avenues for therapeutic intervention.
 
Overall design Examination of different gene expression in RKO wild type or BCL9 deficiency cell line with or without poly I:C treatment
 
Contributor(s) Carrasco R, Jiang M
Citation(s) 31911584
BioProject PRJNA554110
Submission date Nov 15, 2019
Last update date Mar 16, 2020
Contact name Ruben Carrasco
Organization name dana farber cancer institute
Department Pathology Oncology
Lab Ruben Carrasco's Lab
Street address 450 brookline ave
City brookline
State/province MASSACHUSETTS
ZIP/Postal code 02215
Country USA
 
Platforms (1)
GPL21697 NextSeq 550 (Homo sapiens)
Samples (12)
GSM4162883 RKO_wild_type_1
GSM4162884 RKO_wild_type_2
GSM4162885 RKO_wild_type_3
Relations
SRA SRP214298

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Supplementary file Size Download File type/resource
GSE140488_Gene_expression_cpm.txt.gz 975.8 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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