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| Status |
Public on Nov 12, 2019 |
| Title |
RNA-seq analysis of colorectal cancer cell lines HT29-POLR1D-silenced and SW480-POLR1D-silenced |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Purpose: To explore the effect of POLR1D on colorectal cancer cell lines HT29 and SW480.
Methods: Whole transcriptome profiles of POLR1D knock down and AllStars Negative Control transfected colorectal cancer cell line (ie. HT29 and SW480) were generated by whole transcriptome sequencing, in replicate, using the Illumina NextSeq 550. The sequence reads that passed quality filters were analyzed at the gene level with Kallisto followed by DESeq2.
Results: 45 genes showed consistent change after silencing of POLR1D, which included 2 genes that are well-known to be involved in the cell growth-related pathway, ie. VEGFA and EREG.
Conclusions: POLR1D can infulence cell proliferation through VEGFA and EREG related pathway.
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| Overall design |
Whole transcriptome profiles of POLR1D-silenced and AllStars Negative Control transfected colorectal cancer cell lines HT29 and SW480 in replicate, using Illumina NextSeq 550.
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| Contributor(s) |
Zhou Q, Perakis SO, Heitzer E, Speicher MR |
| Citation(s) |
32087735 |
| |
| Submission date |
Nov 11, 2019 |
| Last update date |
Jun 04, 2020 |
| Contact name |
Samantha Perakis |
| E-mail(s) |
[email protected]
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| Organization name |
Diagnostic & Research Institute of Human Genetics; MedUniGraz
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| Street address |
Neue Stiftingtalstraße 6
|
| City |
Graz |
| ZIP/Postal code |
8010 |
| Country |
Austria |
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| Platforms (1) |
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| Samples (20)
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| Relations |
| BioProject |
PRJNA588778 |
| SRA |
SRP229492 |
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