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Series GSE138596 Query DataSets for GSE138596
Status Public on Jun 02, 2020
Title Insights into olfactory ensheathing cell development from a laser-microdissection and transcriptome-profiling approach
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Olfactory ensheathing cells (OECs) are neural crest-derived glia that ensheath bundles of olfactory axons from their peripheral origins in the olfactory epithelium to their central targets in the olfactory bulb. We took an unbiased laser microdissection and differential RNA-seq approach, validated by in situ hybridisation, to identify candidate molecular mechanisms underlying mouse OEC development and differences with the neural crest-derived Schwann cells developing on other peripheral nerves. We identified 25 novel markers for developing OECs in the olfactory mucosa and/or the olfactory nerve layer surrounding the olfactory bulb, of which 15 were OEC-specific, i.e., not expressed by Schwann cells. One pan-OEC-specific gene, Ptprz1, encodes a receptor-like tyrosine phosphatase that blocks oligodendrocyte differentiation. Mutant analysis suggests Ptprz1 may also act as a brake on OEC differentiation, and that its loss disrupts olfactory axon targeting. Overall, our results provide new insights into OEC development and the diversification of neural crest-derived glia. 
 
Overall design Embryonic mouse olfactory nerve regions (at E11.5, E13.5 and E16.5) and trigeminal nerve (at E16.5) were isolated in situ by laser microdissection of 8 μm cryosections of flash-frozen embryos. mRNA profiles were generated by sequencing using the Illumina NextSeq 500 platform (multiplex paired-end). At least 3 replicates were analysed per sample type.
 
Contributor(s) Baker CV
Citation(s) 32857879
Submission date Oct 08, 2019
Last update date Sep 02, 2020
Contact name Clare Baker
E-mail(s) [email protected]
Organization name University of Cambridge
Department Dept. Physiology, Development & Neuroscience (PDN)
Street address Downing Street
City Cambridge
State/province Cambridgeshire
ZIP/Postal code CB2 3DY
Country United Kingdom
 
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (31)
GSM4114017 E11.5_ON1
GSM4114018 E11.5_ON2
GSM4114019 E11.5_ON3
Relations
BioProject PRJNA576477
SRA SRP224809

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Supplementary file Size Download File type/resource
GSE138596_Perera_Suppl_File_1.xlsx 2.5 Mb (ftp)(http) XLSX
GSE138596_Perera_Suppl_File_2.xlsx 4.7 Mb (ftp)(http) XLSX
GSE138596_count_matrix_allsamples.txt.gz 1.3 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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