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Series GSE136586 Query DataSets for GSE136586
Status Public on Aug 29, 2019
Title Kallikrein-mediated cytokeratin 10 degradation is required for VZV propagation in skin
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Varicella Zoster Virus (VZV) is a skin-tropic virus that infects epidermal keratinocytes and causes chickenpox. Although common, VZV infection can be life-threatening particularly in the immunocompromised. Therefore, understanding VZV-keratinocyte interactions is important to find new treatments beyond vaccination and anti-viral drugs. In VZV- infected skin, Kallikrein 6 (KLK6), and the ubiquitin-ligase MDM2 are up-regulated concomitant with Keratin 10 (K10) down-regulation. MDM2 binds to K10 targeting it for degradation via the ubiquitin-proteasome pathway. Preventing K10 degradation reduced VZV propagation in culture and prevented epidermal disruption in skin explants. K10 knockdown induced expression of the nuclear receptor subfamily 4, group A, member 1 (NR4A1) and enhanced viral propagation in culture. NR4A1 knockdown prevented viral propagation in culture, reduced LC3 levels and increased LAMP2 expression. We therefore describe a novel drug-able pathway whereby MDM2 ubiquitinates and degrades K10 increasing NR4A1 expression allowing VZV replication and propagation.
 
Overall design 12 samples: 3 uninfected, 3 VZV infected, 3 VZV infected treated with Nutlin-3, 3 uninfected treated with nutlin-3. VZV infected samples were infected with the pOka strain of the VZV virus. Uninfected are the reference in this analysis.
Web link https://www.sciencedirect.com/science/article/pii/S0022202X19332385
 
Contributor(s) O'Shaughnessy R, Depledge D
Citation(s) 31626786
BioProject PRJNA561812
Submission date Aug 28, 2019
Last update date Jan 14, 2020
Contact name Ryan O'Shaughnessy
E-mail(s) [email protected]
Organization name Queen Mary University of London
Street address 4 Newark Street
City London
ZIP/Postal code E12AT
Country United Kingdom
 
Platforms (1)
GPL21697 NextSeq 550 (Homo sapiens)
Samples (12)
GSM4052311 Uninf 1
GSM4052312 Uninf 2
GSM4052313 Uninf 3
Relations
SRA SRP219194

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE136586_RNAseq_data.txt.gz 550.8 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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