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| Status |
Public on Aug 03, 2020 |
| Title |
Host cell - V. vulnificus interactions |
| Organisms |
Homo sapiens; Vibrio vulnificus MO6-24/O |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Dual transcriptome analysis of the V. vulnificus-infected human cells; To understand toxin-stimulated host-pathogen interactions, we set up dual transcriptome sequencing experiments using the human epithelial (HT-29) or immune (differentiated THP-1; dTHP-1) cells infected with the sepsis-causing pathogen Vibrio vulnificus, either in wild-type or the MARTX toxin-deficient backgrounds.
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| |
|
| Overall design |
HT-29 or dTHP-1 cells were infected with either wild-type or rtxA1 mutant V. vulnificus, and the total RNAs were extracted for sequencing
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| |
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| Contributor(s) |
Kim B, Koh S, Kim M, Kim J, Kim S |
| Citation(s) |
32817457 |
| |
| Submission date |
Aug 28, 2019 |
| Last update date |
Aug 31, 2020 |
| Contact name |
Jong Hwan Kim |
| E-mail(s) |
[email protected]
|
| Phone |
0821093299557
|
| Organization name |
Korea Research Institute of Bioscience and Biotechnology
|
| Department |
Genome structure research center
|
| Street address |
125 Gwahak-ro, Yuseong-gu
|
| City |
Daejeon |
| ZIP/Postal code |
ASI|KR|KS015|DAEJEON |
| Country |
South Korea |
| |
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| Platforms (1) |
| GPL27157 |
Illumina HiSeq 2000 (Homo sapiens; Vibrio vulnificus MO6-24/O) |
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| Samples (54)
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| Relations |
| BioProject |
PRJNA562638 |
| SRA |
SRP219588 |
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