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Series GSE136267 Query DataSets for GSE136267
Status Public on Aug 24, 2019
Title Analysis of Drosophila melanogaster Chromosome Topology in Larval Eye and Antennal Discs
Organism Drosophila melanogaster
Experiment type Other
Summary The goal of this study was to examine chromosome topology in Drosophila larval eye and antennal discs by identifying topologically associating domains (TADs) across the genome. TADs were compared between the eye and antennal disc to determine whether they contribute to cell-type-specific homologous pairing and transvection.
 
Overall design HiC profiles of Drosophila third-instar larval eye and antennal discs were generated by deep sequencing in triplicate.
 
Contributor(s) Viets K, Johnston RJ Jr
Citation(s) 31607649
Submission date Aug 23, 2019
Last update date Nov 24, 2019
Contact name Robert Johnston
Organization name Johns Hopkins University
Department Biology
Street address 3400 N. Charles St.
City Baltimore
State/province Maryland
ZIP/Postal code 21218
Country USA
 
Platforms (1)
GPL19132 Illumina NextSeq 500 (Drosophila melanogaster)
Samples (6)
GSM4043718 Eye disc rep 1
GSM4043719 Eye disc rep 2
GSM4043720 Eye disc rep 3
Relations
BioProject PRJNA561788
SRA SRP219433

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE136267_Antennal_disc_all_reps.cool.gz 21.7 Mb (ftp)(http) COOL
GSE136267_Antennal_disc_all_reps_DI.bedgraph.gz 229.7 Kb (ftp)(http) BEDGRAPH
GSE136267_Antennal_disc_all_reps_TADs.bed.gz 6.3 Kb (ftp)(http) BED
GSE136267_Eye_disc_all_reps.cool.gz 59.7 Mb (ftp)(http) COOL
GSE136267_Eye_disc_all_reps_DI.bedgraph.gz 231.2 Kb (ftp)(http) BEDGRAPH
GSE136267_Eye_disc_all_reps_TADs.bed.gz 5.7 Kb (ftp)(http) BED
GSE136267_RAW.tar 92.1 Mb (http)(custom) TAR (of BED, BEDGRAPH, COOL)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record
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